CK740303

Overview
NameCK740303
Unique NameCK740303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.349e-33
Identity = 78/125 (62.40%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALKTSQPFY------MQLPA---TTLTMCPSCE 490
            G  RKKLRLSKEQS+FLE+SFKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LT ENRRLQ+E+ ELR AL+T+   Y        LPA   T   +CPSCE
Sbjct:  149 GGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.835e-33
Identity = 77/125 (61.60%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALKTSQPFY------MQLPA---TTLTMCPSCE 490
            G  RKKLRLSKEQS+FLE+SFKEH+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LT ENRRLQ+E+ ELR  L+T+   Y        LPA   T   +CPSCE
Sbjct:  149 GGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.835e-33
Identity = 71/119 (59.66%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  158 KKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQ------LPATTLTMCPSCERV 496
            KKLRLSKEQS  LEESF+ ++T               RPRQVEVWFQNRRARTKLKQTE++CEYLKRC  +LTEENRRLQ+E++ELRA++ + P  +       LPA+ LTMCP CER+
Sbjct:   78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERI 196          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.835e-33
Identity = 71/119 (59.66%), Postives = 86/119 (72.27%), Query Frame = 2
Query:  158 KKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQ------LPATTLTMCPSCERV 496
            KKLRLSKEQS  LEESF+ ++T               RPRQVEVWFQNRRARTKLKQTE++CEYLKRC  +LTEENRRLQ+E++ELRA++ + P  +       LPA+ LTMCP CER+
Sbjct:   78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERI 196          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.166e-32
Identity = 75/118 (63.56%), Postives = 83/118 (70.34%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALK-TSQPFYMQLPATTLTMCPSCERV 496
            G  RKKLRLSK+Q+A LEE FK H+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKR C+ L ++NRRL KEL ELRALK T  P     P TTLTMC SC+RV
Sbjct:   90 GGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKRV 207          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.166e-32
Identity = 75/118 (63.56%), Postives = 83/118 (70.34%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALK-TSQPFYMQLPATTLTMCPSCERV 496
            G  RKKLRLSK+Q+A LEE FK H+T               RPRQVEVWFQNRRARTKLKQTEVDCE+LKR C+ L ++NRRL KEL ELRALK T  P     P TTLTMC SC+RV
Sbjct:   90 GGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKRV 207          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.392e-32
Identity = 75/123 (60.98%), Postives = 83/123 (67.48%), Query Frame = 2
Query:  155 RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTS---------QPFYMQLPATTLTMCPSCERV 496
            RKKLRLSK+Q+A LEE FK H+T               RPRQVEVWFQNRRARTKLKQTEVDCEYLKR CE L +EN+RL+KEL +LRALK +         QP      A TLTMCPSC RV
Sbjct:  114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQP--SSSAAATLTMCPSCRRV 234          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.392e-32
Identity = 75/123 (60.98%), Postives = 83/123 (67.48%), Query Frame = 2
Query:  155 RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTS---------QPFYMQLPATTLTMCPSCERV 496
            RKKLRLSK+Q+A LEE FK H+T               RPRQVEVWFQNRRARTKLKQTEVDCEYLKR CE L +EN+RL+KEL +LRALK +         QP      A TLTMCPSC RV
Sbjct:  114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQP--SSSAAATLTMCPSCRRV 234          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.199e-31
Identity = 70/127 (55.12%), Postives = 86/127 (67.72%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTS------QPFYMQLP----ATTLTMCPSCERV 496
            G TRKKL+L+KEQS  LE+SF+ HN                +PRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE+LTEEN++L+ EL ELR L ++         Y+Q P    A  + +CPSCE+V
Sbjct:  111 GGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKV 237          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.872e-31
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKT------SQPFYMQLP----ATTLTMCPSCERV 496
            G TRKKL+L+KEQS  LE+SF+ HN                +PRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE+LTEEN++L+ EL ELR L +          Y+Q P    A  + +CPSCE+V
Sbjct:  111 GGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKV 237          
The following BLAST results are available for this feature:
BLAST of CK740303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HOX7_ORYSI2.349e-3362.40Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX7_ORYSJ6.835e-3361.60Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX3_ORYSJ6.835e-3359.66Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI6.835e-3359.66Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX28_ORYSJ1.166e-3263.56Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI1.166e-3263.56Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX2_ORYSJ3.392e-3260.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI3.392e-3260.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX18_ORYSI2.199e-3155.12Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX18_ORYSJ2.872e-3155.12Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6447 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740303 ID=CK740303; Name=CK740303; organism=Citrus sinensis; type=EST; length=570bp
GGCGCTGTCATCTCCGAACAGTACGGTGTCGTCTTTTCAAATGGATCACT
TTTGTATAAGAAACGGAAGGAGCAAGAGAGATTTATTCGATGTTGAAATA
AGTCATGACAGAGCAAGTTCAAGAGCAAGTGATGATGAAGAAAATGGCTT
AACAAGAAAAAAGCTGAGGCTCTCTAAAGAACAATCTGCTTTTCTCGAAG
AAAGTTTCAAAGAACACAATACCCTCAATCCCAAGCAAAAGCTTGCTTTG
GCCAAACAATTGAATCTCCGTCCTCGCCAAGTTGAAGTGTGGTTTCAAAA
CCGGAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTGGATTGTGAGTATT
TAAAGAGATGCTGTGAGACATTGACGGAAGAGAACAGGAGGTTACAGAAA
GAGCTGCAAGAATTAAGAGCTTTAAAAACCTCTCAACCTTTTTACATGCA
GCTCCCTGCCACTACTCTCACTATGTGTCCTTCTTGCGAGCGCGTGGGCA
CCGGCTCCACCTCCGGCGGCACAGCCACCACTGCAGCAGCTGCTACCACC
GCCGCTAAGGGCAACAACAG
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