CK740303

Overview
NameCK740303
Unique NameCK740303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.972e-28
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 2
Query:  155 RKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            RKKLRL++EQS  LE+SF++++T               RPRQ+EVWFQNRRAR+KLKQTE++CEYLKR   +LTEEN RL +E++ELRA+K          A++LTMCP CERV
Sbjct:  138 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--ASSLTMCPRCERV 249          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.781e-26
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERV 496
            G  RKKLRL+KEQS  LEESF +++T                 RQVEVWFQNRRAR+KLK TE++CEYLKR   +L E+NRRLQ E++ELRALK S         + LTMCP CERV
Sbjct:   65 GRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSS-------TSALTMCPRCERV 174          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.759e-23
Identity = 56/114 (49.12%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  146 GLTRKKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSC 487
            G +RKKLRL+ EQ+  LE+SF+ HN                  RQVEVWFQNRRARTKLKQTE DC+ L+R C+ L  +N RL+++L ELR   +S P    L   T  +CPSC
Sbjct:  113 GASRKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSPP-VSGLAVATPVVCPSC 225          
BLAST of CK740303 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  158 KKLRLSKEQSAFLEESFKEHNTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR----ALKTSQP 439
            KK RL+ EQ   LE+ F+  N                +PRQ+ +WFQNRRAR+K KQ E D + LKR  E+L +EN  LQ + Q+L+    ALK+ +P
Sbjct:   71 KKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSREP 168          
The following BLAST results are available for this feature:
BLAST of CK740303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ATB17_ARATH2.972e-2855.26Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
ATHBX_ARATH2.781e-2655.56Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX26_ORYSJ3.759e-2349.12Putative homeobox-leucine zipper protein HOX26 OS=... [more]
ATB23_ARATH1.134e-1141.84Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6447 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740303 ID=CK740303; Name=CK740303; organism=Citrus sinensis; type=EST; length=570bp
GGCGCTGTCATCTCCGAACAGTACGGTGTCGTCTTTTCAAATGGATCACT
TTTGTATAAGAAACGGAAGGAGCAAGAGAGATTTATTCGATGTTGAAATA
AGTCATGACAGAGCAAGTTCAAGAGCAAGTGATGATGAAGAAAATGGCTT
AACAAGAAAAAAGCTGAGGCTCTCTAAAGAACAATCTGCTTTTCTCGAAG
AAAGTTTCAAAGAACACAATACCCTCAATCCCAAGCAAAAGCTTGCTTTG
GCCAAACAATTGAATCTCCGTCCTCGCCAAGTTGAAGTGTGGTTTCAAAA
CCGGAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTGGATTGTGAGTATT
TAAAGAGATGCTGTGAGACATTGACGGAAGAGAACAGGAGGTTACAGAAA
GAGCTGCAAGAATTAAGAGCTTTAAAAACCTCTCAACCTTTTTACATGCA
GCTCCCTGCCACTACTCTCACTATGTGTCCTTCTTGCGAGCGCGTGGGCA
CCGGCTCCACCTCCGGCGGCACAGCCACCACTGCAGCAGCTGCTACCACC
GCCGCTAAGGGCAACAACAG
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