CK740304

Overview
NameCK740304
Unique NameCK740304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   54 CTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   51 CGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV+ L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   51 CGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 190
            CNGVR LN AA+TTPDRQ AC CLK    +   IN N A  LP +CG+SI YKI+PN DCS++
Sbjct:   53 CNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.879e-16
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV++LN  A+TTPDRQ AC C++   +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   52 CAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.678e-16
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV  LN  ARTTPDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:   54 CTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.678e-16
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   57 CKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV+ L G A+TT DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   51 CGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   52 CAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CK740304 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 CNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 193
            C GV+ L G A+TT DRQAAC CLK A  S   ++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   51 CGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CK740304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
NLTP1_BRANA2.021e-1660.94Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP2_TOBAC2.639e-1659.38Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SOLPN2.639e-1659.38Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_GERHY3.447e-1660.32Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_ARATH5.879e-1653.13Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTPA_BRAOT7.678e-1656.92Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP6_GOSHI7.678e-1660.94Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP2_SOLPN2.234e-1557.81Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP4_ARATH8.489e-1554.69Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_SOLCI8.489e-1557.81Non-specific lipid-transfer protein 2 OS=Solanum c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6448 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740304 ID=CK740304; Name=CK740304; organism=Citrus sinensis; type=EST; length=368bp
CTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACC
GCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGC
ATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCAT
TCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTT
GAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAAT
AAATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTG
TGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATA
TTAAATATGTAAACGTGA
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