CK740317

Overview
NameCK740317
Unique NameCK740317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740317 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.427e-16
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   85 QQLSVDQPEPQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIAKANPVVKADKLDRI 315
            Q  S+++P+ +     RC  C KKVGLTGF+C+CG+ +CG+HRY + H+C++++K    + I K NPVV  +K+ +I
Sbjct:  135 QSKSLEKPKQKKN---RCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CK740317 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.471e-14
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  142 SCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIAKANPVVKADKLDRI 315
            +C KKVGL GF C+CG  F   HRYPE+H C  D+K    D +AK NPVVK DKL R+
Sbjct:   68 ACKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125          
BLAST of CK740317 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.332e-14
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  106 PEPQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIAKANPVVKADKLDRI 315
            P    K   RC +C KKVGL GF C+CG  FCG H       C FD+K  GR+AIA+ NP+V A K+++I
Sbjct:   89 PATVTKAKNRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIARHNPLVVAPKINKI 152          
BLAST of CK740317 vs. ExPASy Swiss-Prot
Match: SAP13_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 13 OS=Oryza sativa subsp. japonica GN=SAP13 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.079e-13
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  106 PEPQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKV---TGRDAIAKANPVVKADKLDRI 315
            P P+AK  +RC +C ++VGL GF+C+CG+ FCG H  P         ++    GRDAIA+ANPVV ADK+D++
Sbjct:  166 PPPRAKTKSRCAACGRRVGLMGFECRCGAVFCGAH--PLLGQARLWLRLQGRAGRDAIARANPVVSADKVDKL 236          
BLAST of CK740317 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.715e-13
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  109 EPQAKGPTRCLSCNKKVGL-TGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIAKANPVVKADKLDRI 315
            + + K    C  C KK GL + ++C+CG+ FC  HRY E H CT+D+K  GR  + +ANPVV A KL +I
Sbjct:  658 QTKKKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of CK740317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ZFAN6_BOVIN3.427e-1642.86AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
SAP8_ARATH5.471e-1456.90Putative zinc finger A20 and AN1 domain-containing... [more]
SAP10_ORYSJ9.332e-1448.57Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP13_ORYSJ2.079e-1347.95Zinc finger AN1 domain-containing stress-associate... [more]
ANUB1_HUMAN2.715e-1345.71AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6461 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740317 ID=CK740317; Name=CK740317; organism=Citrus sinensis; type=EST; length=459bp
CAAATCCATCAGACGCCAGAATTGGAGACTGCCAAGGTGGCTGCTGAGCC
CTTTGTGGGTTCCTCGTCGTCTGCTGCGGCCTCTCAACAGTTGAGTGTTG
ATCAGCCTGAGCCCCAAGCCAAGGGGCCTACCAGGTGCTTGAGTTGCAAC
AAGAAGGTCGGATTGACAGGGTTCAAGTGTAAGTGCGGGAGTACTTTCTG
TGGAATCCATCGGTACCCAGAGAAGCATGATTGTACATTTGATTTTAAGG
TTACTGGTCGAGATGCTATTGCCAAAGCAAATCCTGTTGTTAAAGCTGAT
AAGCTGGACAGGATCTGAAATCAGAGTCTGGTAATTTGGTTTGCTTTGGT
ATGGTAATTGTCGTCGGTTGGGTTATTGTTGATTTAGCTTAGCTTTCTTT
CCTGCTGTTCTTGTTAGTGGTGGTCAGGACTTGGGAGGGACTCGTAAATG
TAGTTTCCT
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