CK740324

Overview
NameCK740324
Unique NameCK740324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 51/158 (32.28%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 458
            DVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +GK  KP +SLP
Sbjct:   89 DVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGK-DKPKISLP 243          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 46/159 (28.93%), Postives = 78/159 (49.06%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 455
            DV+S+P  NE+F ++ D KGR +L+ I+D     KLCK+ +    + G   +N +DGR          +  + + K  D + L +    I   ++F  G +  +TGG++ G    I   EK +   + I ++   G +F T    VF +G   KP +S+
Sbjct:   89 DVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKTIRDYVFIVG-DDKPVISM 244          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 50/158 (31.65%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 458
            DVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +G+  KP +SLP
Sbjct:   89 DVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.025e-11
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 455
            DV+++P  NE +R+L D KGR  LH + +     KLC++ +    + G   +N  DG  I   +      D++ L +   ++ + +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   83 DVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNEY-GTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 42/159 (26.42%), Postives = 81/159 (50.94%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 455
            DV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   89 DVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 42/159 (26.42%), Postives = 81/159 (50.94%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 455
            DV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   89 DVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 43/145 (29.66%), Postives = 74/145 (51.03%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 431
            DV+SIP+   N+R++ D     RL  I   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L +  + + ++FD G+ V+VT GR  GR+G +      +G    I ++D    E + R    N+  +GK
Sbjct:   89 DVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 455
            DV+++P  NE +R+  D KGR  LH +       KLC++ +    + G   +N  DG  I   +      D++ L L   +I + ++F VGN+ MV GG++ G +G I + RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   83 DVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNEY-STKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSSRHNTVAISGET--DFETIEDYVIVIGE-DKPEIRL 229          
The following BLAST results are available for this feature:
BLAST of CK740324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS4E_PYRHO2.392e-1232.2830S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_META36.959e-1228.9330S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_PYRAB9.088e-1231.6530S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METAC2.025e-1130.9230S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_METVS2.644e-1126.4230S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA2.644e-1126.4230S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_KORCO5.891e-1129.6630S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_METBF7.694e-1130.9230S ribosomal protein S4e OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6468 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740324 ID=CK740324; Name=CK740324; organism=Citrus sinensis; type=EST; length=584bp
TGGATGTTGTGTCAATTCCAAAGACCAATGAGAACTTCCGTCTCCTTTAC
GACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAA
GTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCC
CTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAGACCCACTC
ATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGATCAC
CGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGAGGGA
GAAACAGAGGACGTGTTGGAATCATTAAGAACAGAGAAAAGCATAAGGGT
AGCTTTGAAACTATCCACATCCAGGATGCTCTTGGTCATGAGTTTGCAAC
TCGTCTTGGAAATGTGTTCACCATTGGCAAGGGTACAAAGCCATGGGTTT
CTCTTCCCAAGGGCAAGGGTATTAAACTATCCATCATTGAGGAGGCAAGG
AAGAGACAAGCCCTGGCGACTTCAGCAGCCGCCCAATGATGATAAACTTC
ATGGTCTTTGCGATATGGTTTTAGAAAGTTTACT
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