CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+   V F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAAGV-FRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.911e-16
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            F++ L   +D+P  PP   F++++FHPN+ A+G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA R+  EN  EY  R R + E
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          

HSP 2 Score: 21.1718 bits (43), Expect = 5.911e-16
Identity = 8/24 (33.33%), Postives = 12/24 (50.00%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P +  +      I GP+ TP+ GG
Sbjct:   35 PNEEDLTDLQVTIEGPEGTPYAGG 58          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.913e-16
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            F++ L   +D+P  PP   F++++FHPN+ A+G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA R+  EN  EY  R R + E
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          

HSP 2 Score: 21.1718 bits (43), Expect = 5.913e-16
Identity = 8/24 (33.33%), Postives = 12/24 (50.00%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P +  +      I GP+ TP+ GG
Sbjct:   35 PNEEDLTDLQVTIEGPEGTPYAGG 58          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   43 LYSGRMTPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            +  G  TP+   V FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  + +  R+  E+
Sbjct:   38 ILGGANTPYEKGV-FKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 149          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+ + + F++ L  ++D+P  PP   F++++FHPN+ ++G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAVGI-FRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+   + F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAAGI-FRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+ + + F++ L  ++D+P  PP   F++++FHPN+  +G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAVGI-FRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.800e-16
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+ + + F++ L  ++D+P  PP   F++++FHPN+  +G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAVGI-FRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.969e-16
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYHRRVREIV 363
            FK  L+F  DYP  PP  RF+++M+HPNIY  G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ M+ + K      REY   +R+ V
Sbjct:   58 FKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169          

HSP 2 Score: 24.6386 bits (52), Expect = 9.969e-16
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 3
Query:   33 WNAVIFGPDDTPWDGG 80
            W   IFGP +T ++GG
Sbjct:   41 WEVAIFGPPNTYYEGG 56          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.969e-16
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYHRRVREIV 363
            FK  L+F  DYP  PP  RF+++M+HPNIY  G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ M+ + K      REY   +R+ V
Sbjct:   58 FKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169          

HSP 2 Score: 24.6386 bits (52), Expect = 9.969e-16
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 3
Query:   33 WNAVIFGPDDTPWDGG 80
            W   IFGP +T ++GG
Sbjct:   41 WEVAIFGPPNTYYEGG 56          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBE2S_DROER4.573e-1638.24Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBE2S_BOVIN5.911e-1638.30Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBE2S_HUMAN5.913e-1638.30Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2T_HUMAN5.972e-1637.17Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2S_DROGR5.972e-1636.27Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBE2S_DROAN5.972e-1637.25Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBE2S_DROPS7.800e-1636.27Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE7.800e-1636.27Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UB2R1_MOUSE9.969e-1639.29Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN9.969e-1639.29Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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