CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.319e-15
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L L   ++YP  PP VRF+++++HPN+   G ICL  L+  WSP   +  +L SIQ+L+  PNP+ P +++ A+++ EN+ +     RE
Sbjct:   51 FHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANARE 141          

HSP 2 Score: 20.4014 bits (41), Expect = 1.319e-15
Identity = 6/25 (24.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:    6 APQDNSIMLWNAVIFGPDDTPWDGG 80
            AP ++++  +   + GP  + ++GG
Sbjct:   25 APTEDNLRYFKITMEGPQQSAYEGG 49          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+   + F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAAGI-FRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+   + F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAAGI-FRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   61 TPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            TP+   + F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y +R R + E
Sbjct:   56 TPYAAGI-FRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 36/97 (37.11%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            +K+ ++ TE YP K P++ F ++++HPN+    GS+CLD++   WSP++D+  I    +  LL  PNP+ P N EAA +   +K  Y  +V+E  E+
Sbjct:   49 WKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCER 145          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVR 354
            F+ T  F E YP  PP V   +++FHPNI   G ICL+IL+  WSP  D+  I+  + SL  +PN N P N EAA + +++K E+   VR
Sbjct:   81 FRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   43 LYSGRMTPHGMEVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            +  G  TP+   V F L +   E YP +PP VRF++ ++HPNI + G ICLDIL    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  + ++ ++  E
Sbjct:   38 ILGGANTPYEKGV-FTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTE 148          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 35/97 (36.08%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA +   ++  Y +RV+E  E+
Sbjct:   49 WKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEK 145          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 35/97 (36.08%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA +   ++  Y +RV+E  E+
Sbjct:   49 WKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEK 145          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.192e-15
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVE 366
            F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA R+  EN  EY  R R + E
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          

HSP 2 Score: 21.1718 bits (43), Expect = 2.192e-15
Identity = 8/24 (33.33%), Postives = 12/24 (50.00%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P +  +      I GP+ TP+ GG
Sbjct:   35 PNEEDLTDLQVTIEGPEGTPYAGG 58          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC13_SCHPO1.319e-1538.46Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2S_DROSI1.330e-1537.25Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE1.330e-1537.25Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME1.330e-1537.25Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBC4_WHEAT1.330e-1537.11Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_CANGA1.330e-1543.33NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBE2T_MOUSE1.738e-1537.50Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC5_ARATH1.738e-1536.08Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH1.738e-1536.08Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBE2S_RAT2.192e-1537.23Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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