CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 336
            FK  L   E+YP   P VRF+++++HPN+     I LDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++    +  N+ +
Sbjct:   53 FKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQ 136          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.349e-12
Identity = 28/90 (31.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVR 354
            F  T Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L  +PN   P N +AA +  +N + +   VR
Sbjct:   78 FVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVR 167          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.067e-12
Identity = 28/90 (31.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVR 354
            F  + Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L  +PN   P N EAA +  +N + +   VR
Sbjct:   79 FVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.356e-12
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   97 LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            +QFTE+YPN  P +RFV+ + H NI   G +C  IL   ++P   ++ IL  I  LL +P+ N P ++  A ++ +    Y  ++ + V +
Sbjct: 1186 IQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNK 1276          

HSP 2 Score: 27.335 bits (59), Expect = 5.356e-12
Identity = 10/23 (43.48%), Postives = 12/23 (52.17%), Query Frame = 3
Query:   15 DNSIMLWNAVIFGPDDTPWDGGT 83
            +  I  W  V  GPD TP+  GT
Sbjct: 1159 EQDISFWKIVFKGPDSTPYKNGT 1181          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.833e-12
Identity = 30/96 (31.25%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            F L + F  +YP KPPT+RF ++++HPNI  DG +CL ++  + W P      +L ++  L+  PN   P   E A + +++   + ++  E   Q
Sbjct:   51 FGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQ 146          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 26/96 (27.08%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:   51 FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 26/96 (27.08%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:   51 FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 26/96 (27.08%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:   51 FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 26/96 (27.08%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:   51 FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREY 339
            F+LT+ FT +Y   PP V+FV+  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+ ++++  Y
Sbjct:   53 FQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLY 140          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UE2NL_HUMAN1.798e-1238.10Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
RCE1_ARATH2.349e-1231.11NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UB12L_ARATH3.067e-1231.11Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC4_MIMIV5.356e-1232.97Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UB2L6_RAT6.833e-1231.25Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UB2L3_PONAB1.522e-1127.08Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE1.522e-1127.08Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN1.522e-1127.08Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN1.522e-1127.08Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBE2U_MACFA1.988e-1138.64Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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