CK740329

Overview
NameCK740329
Unique NameCK740329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.644e-24
Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = 3
Query:    6 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKF-DKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYIC-SRRLDHGV 515
            P   DWR KG V PV++QG CGSCW+ ST  A+E  + + +G  V LS QQLVDC            + GCNGG   + FEY +K  GL  + DYPY+G +    CK  DKS+    +  +  V+  E  +   +   GP++  +    M++Y GG+     C    L HGV
Sbjct:  111 PESIDWRSKGVVLPVRNQGECGSCWALSTAAAIESQSAIKSGSKVPLSPQQLVDCSTSYG-------NHGCNGGFAVNGFEY-VKDNGLESDADYPYSGKE--DKCKANDKSRSVVELTGYKKVTASETSLKEAVGTIGPISAVVFGKPMKSYGGGIFDDSSCLGDNLHHGV 272          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.035e-23
Identity = 62/173 (35.84%), Postives = 89/173 (51.45%), Query Frame = 3
Query:    6 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGV 515
            P   DWR+KGAV PVK+Q  CGSCW+FST   +EG N + TGKL+SLSEQ+L+DCD             GC GG    + +Y    GG+  E++YPY    +G     +K      +  +  V  +++      + N P++V   +     Q Y GG+ + P  C  + DH V
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR---------SHGCKGGYQTGSIQYVADNGGVHTEKEYPYE-KKQGKCRAKEKKGTKVQITGYKRVPANDEISLIQGIGNQPVSVLHESKGRAFQLYKGGIFNGP--CGYKNDHAV 162          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.035e-23
Identity = 65/175 (37.14%), Postives = 92/175 (52.57%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVL 518
            LP   DWR++G V PV++QG CGSCW+F+  GA+EG  F  TG L  LS Q L+DC            ++GC  G  + AF Y LK  GL  E  YPY G D    C++     +A++  F  +  +E  +   +   GP++ AI+A +   + Y GGV     CS   ++H VL
Sbjct:  114 LPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDC-------SKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKD--GPCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVL 279          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 61/172 (35.47%), Postives = 98/172 (56.98%), Query Frame = 3
Query:    6 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVL 518
            P +FDWR+   V  VK+QG CG+CW+F+T G+LE    +   +L++LSEQQ +DCD           ++GC+GGL+++AFE  ++ GG+  E DYPY  T  G  C+ + ++    V +    + + E+++   L   GP+ VAI+A  +  Y  G+      +  L+H VL
Sbjct:  114 PLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCDR---------VNAGCDGGLLHTAFESAMEMGGVQMESDYPYE-TANGQ-CRINPNRFVVGVRSCRRYIVMFEEKLKDLLRAVGPIPVAIDASDIVNYRRGI-MRQCANHGLNHAVL 273          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 3
Query:    6 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDE-------DQIAANLVKNGPLAVAINAVYMQTYIGGV 473
            PA +DWR+KG +  VK QG CG  W+FS TGA+E A+ +ATG LVSLSEQ+LVDC  E +         G   G    +FE+ L+ GG+  ++DYPY   +    CK +K +   ++  +  + + +       +Q   + +   P++V+I+A     Y GG+
Sbjct:  136 PASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESE---------GSYNGWQYQSFEWVLEHGGIATDDDYPYRAKE--GRCKANKIQDKVTIDGYETLIMSDESTESETEQAFLSAILEQPISVSIDAKDFHLYTGGI 287          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 62/174 (35.63%), Postives = 87/174 (50.00%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVL 518
            LP   DWR +G V  V+ QG C SCW+F  TGA+EG  F  TGKL+ LS Q L+DC            + GC  G   +AF+Y L  GGL  E  YPY   +    C+++    +A +  F V+   ED +   +   GP+A  ++ +    + Y  GV     CS  ++H VL
Sbjct:  125 LPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDCSKP-------QGNRGCLWGNTYNAFQYVLHNGGLEAEATYPYERKE--GVCRYNPKNSSAKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSYVNHAVL 289          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGV 515
            LP+  DWR  GAV  +K QG CG CW+FS    +EG N + TG L+SLSEQ+L+DC    +         GCNGG +   F++ +  GG+  EE+YPYT  D    C  D +++   ++  +  V  + +      V   P++VA++A     + Y  G+     C   +DH V
Sbjct:  127 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD--GECNLDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKHYSSGIFTG-PCGTAIDHAV 290          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 61/175 (34.86%), Postives = 91/175 (52.00%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA---VYMQTYIGGVSCPYICSRRLDHGV 515
            LP+  DWR  GAV  +K QG CG CW+FS    +EG N + TG L+SLSEQ+L+DC    +         GCNGG +   F++ +  GG+  EE+YPYT  D    C  D +++   ++  +  V  + +      V   P++VA++A    + Q   G  + P  C   +DH V
Sbjct:  127 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD--GECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP--CGTAVDHAV 290          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23
Identity = 55/171 (32.16%), Postives = 97/171 (56.73%), Query Frame = 3
Query:    6 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVL 518
            P +FDWR++  V  +K+Q +CG+CW+F+T  ++E    +     + LSEQQ++DCD+          D GC+GGL+++AFE  ++ G L++E +YPY G ++    + D++ +      +  V   E+++   L   GP+ +AI+A  +  Y  G+   Y  +  L+H VL
Sbjct:  117 PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCDY---------VDMGCDGGLLHTAFEQMIQMGELVQEHEYPYAGVNKPCELRGDETGVVKVKGCYRYVVFREEKLKDLLRAVGPIPMAIDASGIVNYHHGI-IHYCENYGLNHAVL 277          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 62/173 (35.84%), Postives = 91/173 (52.60%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA-VYMQTYIGGV-SCPYICSRRLDHGV 515
            +P   DWR+ GAV  VK+Q  CGSCWSF+    +EG   + TG LVSLSEQ+++DC          +   GC GG +N A+++ +   G+  EE+YPY        C  +    +A +  +S V  ++++     V N P+A  I+A    Q Y GGV S P  C   L+H +
Sbjct:  123 VPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDC----------AVSYGCKGGWVNKAYDFIISNNGVTTEENYPYLAYQ--GTCNANSFPNSAYITGYSYVRRNDERSMMYAVSNQPIAALIDASENFQYYNGGVFSGP--CGTSLNHAI 281          
The following BLAST results are available for this feature:
BLAST of CK740329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CATLL_PHACE4.644e-2437.21Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
MEX2_JACME1.035e-2335.84Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATJ_RAT1.035e-2337.14Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATV_NPVOP1.765e-2335.47Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
P34_SOYBN3.010e-2335.58P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATQ_RAT3.010e-2335.63Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
ACTN_ACTDE3.010e-2334.48Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
ACTN_ACTCH3.010e-2334.86Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CATV_NPVBS3.931e-2332.16Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
BROM1_ANACO6.706e-2335.84Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6473 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740329 ID=CK740329; Name=CK740329; organism=Citrus sinensis; type=EST; length=519bp
ATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTT
AAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGC
CTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTG
AGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGT
TCTTGTGATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTA
CACACTCAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCG
GCACTGATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCC
TCAGTGGCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGC
CAATCTTGTGAAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACA
TGCAGACATACATTGGGGGAGTTTCCTGCCCATACATATGCTCGAGGCGA
TTGGACCATGGAGTGTTGC
back to top