CK740329

Overview
NameCK740329
Unique NameCK740329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:466..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 58/190 (30.53%), Postives = 82/190 (43.16%), Query Frame = 3
Query:    3 LPADFDWREKGA---VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF---SVVSLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVL 518
            LP  +DWR       V PV++Q SCGSC+SF++ G LE    + T    +  LS Q++V C              GC GG          +  GL+ E  +PYTGTD     K D  +  +S  ++        +E  +   LV +GPLAVA           N +Y  T   G+  P+      +H VL
Sbjct:  231 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASVGMLEARIRILTNNSQTPILSSQEVVSCSQYA---------QGCEGGFPYLTAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVYHGPLAVAFEVYDDFLHYQNGIYHHT---GLRDPFNPFELTNHAVL 408          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 34/103 (33.01%), Postives = 54/103 (52.43%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR 311
            LP++ D R    V P++ QG CGSCW+FS   + E A        + L+EQ+LVDC          +  +GC+G  +    EY ++  G+++E  YPY   ++
Sbjct:  109 LPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC----------ASQNGCHGDTIPRGIEY-IQQNGVVQEHYYPYVAREQ 200          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 46/152 (30.26%), Postives = 73/152 (48.03%), Query Frame = 3
Query:   18 DWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV 473
            DWR    V   K+QG C S W+FS + +LE    +   + ++ S QQ+VDCD+          ++GC+GG    A EY L+  GL+   +YPY    +   CK  ++     +  +S V   +  +   L  N P++V + A   Q Y  G+
Sbjct:  116 DWRNYTTV---KEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDCDYN---------NTGCSGGYNAYAMEYVLRV-GLVSSTNYPYVA--KNQTCKQSRNG-TYFINGYSFVGGSQSNLQYYL-NNYPISVGVEASNWQFYRSGL 250          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 47/154 (30.52%), Postives = 70/154 (45.45%), Query Frame = 3
Query:    3 LPADFDWREKGAVG---PVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVV-----SLDEDQIAANLVKNGPLAVA 434
            LP  +DWR    +    PV++QGSCGSC+SF++ G +E    + T    +  LS Q++V C              GC GG          +  GL+ E+ +PYTGTD    C+  +       + +  V       +E  +   LV  GP+AVA
Sbjct:  231 LPTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTD--SPCRLKEGCFRYYSSEYHYVGGFYGGCNEALMKLELVHQGPMAVA 373          
The following BLAST results are available for this feature:
BLAST of CK740329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CATC_MACFA2.024e-1130.53Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
PEPT1_EURMA3.452e-1133.01Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
CATL3_PARTE5.888e-1130.26Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
CATC_BOVIN5.888e-1130.52Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6473 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740329 ID=CK740329; Name=CK740329; organism=Citrus sinensis; type=EST; length=519bp
ATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTT
AAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGC
CTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTG
AGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGT
TCTTGTGATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTA
CACACTCAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCG
GCACTGATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCC
TCAGTGGCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGC
CAATCTTGTGAAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACA
TGCAGACATACATTGGGGGAGTTTCCTGCCCATACATATGCTCGAGGCGA
TTGGACCATGGAGTGTTGC
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