CK740329

Overview
NameCK740329
Unique NameCK740329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 123.635 bits (309), Expect = 5.301e-28
Identity = 73/177 (41.24%), Postives = 103/177 (58.19%), Query Frame = 3
Query:    6 PADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVL 518
            P   DWR+KG  V PVK+QG+CGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC  + +       + GC GGL + AFEY L   G+M E+ YPY G D G+ CKF   K    V + + +++ DE+ +   +    P++ A         Y  G+     C +   +++H VL
Sbjct:  117 PPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFN-------NHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKD-GY-CKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVL 284          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.924e-28
Identity = 79/179 (44.13%), Postives = 99/179 (55.31%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRR---LDHGVL 518
            LP   DWRE G V PVKDQG CGSCW+FSTTG+LE A   ATGK VSLSEQQLVDC    +       + GC+GGL + AFEY    GGL  EE YPYTG +    C +    +   V    N ++ + DE + A  LV+  P++VA   +   + Y  GV     C      ++H VL
Sbjct:  145 LPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYN-------NFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVN--GICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVL 312          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.924e-28
Identity = 66/159 (41.51%), Postives = 91/159 (57.23%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV 473
            LP   DWREKGAV PVK+QG CGSCW+F    A+EG N + TG L+SLSEQQLVDC          + + GC GG    AF+Y +  GG+  EE YPYTGT+    C   ++    S+ ++  V  ++++     V N P++V ++A     Q Y  G+
Sbjct:    3 LPDSIDWREKGAVVPVKNQGGCGSCWAFDAIAAVEGINQIVTGDLISLSEQQLVDC---------STRNHGCEGGWPYRAFQYIINNGGINSEEHYPYTGTN--GTCDTKENAHVVSIDSYRNVPSNDEKSLQKAVANQPVSVTMDAAGRDFQLYRNGI 150          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.924e-28
Identity = 73/178 (41.01%), Postives = 101/178 (56.74%), Query Frame = 3
Query:    6 PADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINA-----VYMQTYIGGVSCPYICSRRLDHGVL 518
            P   DWR+KG  V PVK+QGSCGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC    +       + GC GGL + AFEY     G+M E+ YPY G D    CKF   K  A V + + +++ DE+ +   +    P++ A        +Y +      SC +    +++H VL
Sbjct:  117 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD--DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSC-HKTPDKVNHAVL 284          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.042e-28
Identity = 76/178 (42.70%), Postives = 104/178 (58.43%), Query Frame = 3
Query:    6 PADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVA--INAVYMQTYIGGVSCPYICSR---RLDHGVL 518
            P   DWR+KG  V PVK+QGSCGSCW+FSTTGALE A  +ATGKL  L+EQQLVDC    +       + GC GGL + AFEY     G+M E+ YPY G D    CK+  SK  A V + + ++L DE+ +   +  + P++ A  + A +M  Y  G+     C +   +++H VL
Sbjct:  117 PPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGD--CKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMM-YRKGIYSSTSCHKTPDKVNHAVL 284          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.542e-27
Identity = 71/175 (40.57%), Postives = 96/175 (54.86%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSR-RLDHGVL 518
            +P   DWR  G V PVK+QG C S W+FS TG+LEG  F  TG+LV LSEQ L+DC          +    C+GG M +AF+Y    GGL  EE YPY G   G  C++     AA+V +F  +   E+ +   + K GP++VA++A +   Q Y  G+     C R  L+H VL
Sbjct:  114 VPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDC-------MGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPYIGP--GRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVL 279          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.014e-27
Identity = 69/172 (40.12%), Postives = 97/172 (56.40%), Query Frame = 3
Query:    6 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVL 518
            PA+FDWR    V  VKDQG CG+CW+F+  GALE    +   +L+ L+EQQLVDCD           D GC+GGL+++A+E  +  GG+ +E DYPY        C     K A  V N +  V L E+++   L   GP+A+A++AV +  Y GGV   +  +  L+H VL
Sbjct:  127 PANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCDF---------VDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKAVRL--PCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVL 286          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.631e-27
Identity = 80/179 (44.69%), Postives = 99/179 (55.31%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICS---RRLDHGVL 518
            LP   DWR+ G V PVK QG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GCNGGL + AFEY    GGL  EE YPYTG  +   CKF ++ I   V    N ++ +  E + A  LV+  P++VA   V   + Y  GV     C      ++H VL
Sbjct:  139 LPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFN-------NFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTG--KNGICKFSQANIGVKVISSVNITLGAEYELKYAVALVR--PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVL 306          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.631e-27
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV 473
            LP  +DWR+   V P+KDQG CGSCW+F   G +E    +   KL+ LSEQQL+DCD           D GCNGGLM+ AF+  L  GG+  E DYPY G+++   C  D  KIA  + + F     DE+++   +   GP+A+A++A+ +  Y  G+
Sbjct:  156 LPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD---------EVDLGCNGGLMHLAFQELLLMGGVETEADYPYQGSEQ--MCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIINYRRGI 302          
BLAST of CK740329 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.631e-27
Identity = 79/179 (44.13%), Postives = 96/179 (53.63%), Query Frame = 3
Query:    3 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAV-YMQTYIGGVSCPYICSRRLD---HGVL 518
            LP   DWRE G V PVK+Q  CGSCW+FSTTGALE A   ATGK +SLSEQQLVDC         G  + GCNGGL + AFEY    GG+  EE YPY G +    C +     A  V    N ++ + DE + A  LV+  P++VA   +   + Y  GV     C    D   H VL
Sbjct:  144 LPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDC-------AGGFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPYKGVN--GVCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVR--PVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVL 311          
The following BLAST results are available for this feature:
BLAST of CK740329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CATH_HUMAN5.301e-2841.24Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
ORYC_ORYSJ6.924e-2844.13Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CPGP1_ZINOF6.924e-2841.51Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CATH_PIG6.924e-2841.01Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_BOVIN9.042e-2842.70Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
TEST2_MOUSE1.542e-2740.57Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATV_NPVMC2.014e-2740.12Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CYSP3_SOLLC2.631e-2744.69Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATV_NPVHZ2.631e-2740.51Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
ALEU_HORVU2.631e-2744.13Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6473 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740329 ID=CK740329; Name=CK740329; organism=Citrus sinensis; type=EST; length=519bp
ATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTT
AAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGC
CTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTG
AGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGT
TCTTGTGATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTA
CACACTCAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCG
GCACTGATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCC
TCAGTGGCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGC
CAATCTTGTGAAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACA
TGCAGACATACATTGGGGGAGTTTCCTGCCCATACATATGCTCGAGGCGA
TTGGACCATGGAGTGTTGC
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