CK932589

Overview
NameCK932589
Unique NameCK932589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:145..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            QET+S N VV+FSKT C +C   K+LF  + V +K +EL+    G+  Q AL + TG++TVP +F+ G  +GG   T  LH+EGKL+PL+
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  116 TVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEA 388
            TV+ N VVV+SKT+C +   VK LF+ L V    +EL++  S+GS +Q+ L + TGQ TVPNVFIGGKH+GGC  T  LH +G+L  +L EA
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            QET+S N VV+FSKT C +C   K+LF+ + V +K +EL+    G+  Q AL + TG +TVP +F+ G  +GG   T  LH+EGKL+PL+
Sbjct:   58 QETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  104 KAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGA 394
            + ++ +  N V++FSK++CP    VKELF  LGV +  +EL++  DG+ +Q  L E + QKTVPN+F+   HVGGCD T   H+ G L  LL +  A
Sbjct:  112 RLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSA 208          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTE 385
            + T++ N VV++SK++C + + VK LF+++GV    IEL++  + G  +Q  L   TGQ TVPNVFIGGKH+GGC  T  LHR+G+L  +L+E
Sbjct:   64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            QET+S+N VV+FSK+ C +C   K++F  + V +K +EL+    GS  Q AL + TG++TVP +F+ G  +GG   T  LH+EGKL+PL+
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKES-DGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEA 388
            ++TV+ N+VV++SKT+C +C  VK LF++LGV    +EL++    G  +Q  L   TGQ TVPNVF+ GKH+GGC  T  L+R+G L  +L EA
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAG 391
            ++T+SS+ +V+FSK++CP+C   K +F++L      +EL++  DG  IQ+AL E  G++TVP VFI GKH+GG D T   +  G+L  LL  +G
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  119 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTE 385
            +  + VV+FSK++CP    VKELF  LGV    +EL++  DG+ +Q  L+E T QKTVPN+F+   HVGGCD T   ++ G L  LL E
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            Q  + SN +V+FSK++CP+C+  K +F QL      +EL++  DG  IQ  L E+ G++TVP VF+ GKH+GG D   A    G+L  LL
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
The following BLAST results are available for this feature:
BLAST of CK932589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
GLRX2_HUMAN1.321e-1946.67Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GRS12_ARATH2.944e-1952.17Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX2_PONAB2.944e-1946.67Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
TRXR3_MOUSE3.845e-1943.30Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRS10_ORYSJ3.845e-1947.31Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GLRX2_RAT5.021e-1945.56Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GRXC5_ARATH1.119e-1847.87Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC4_ARATH1.908e-1843.62Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
TRXR3_HUMAN9.470e-1847.19Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC3_ARATH1.367e-1643.33Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_H12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932589 ID=CK932589; Name=CK932589; organism=Citrus sinensis; type=EST; length=616bp
GGGGAAGTTCTCTCCTTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTAG
GGTTTGTGAGATTTCGAATCAAAGACAAAGAAGACACAGAAATGGCTTTG
CCCAAGGCCCAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAA
AACGTTTTGTCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCG
GAGTCACTTTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAGTGAC
ATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAAATGT
CTTCATCGGAGGGAAACACGTTGGTGGCTGCGATTCAACTACTGCACTGC
ACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCC
AAGACAGCTGCCTGATGGATGGCTATTGTCTGCCTGTTAATTCTAGTAAT
AAATAAAGAATGTGTTGGTAGTGCTTAATCTGTCTGAATTAAACATGAAA
TTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTT
TTATGTTGAAATCTGTATGAATTTTATCAGATTTTTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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