CK932589

Overview
NameCK932589
Unique NameCK932589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:145..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 39/92 (42.39%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFK--AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            + TV ++ VV+FSK++CP+C   K +F++L +  +   +EL++  DG +IQ AL++  G++TVP VF+ GKH+GG D T   +  GKL  LL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            Q  + SN + +FSKT+CP+ +  K +F+ L      +EL+   DG +IQS L +  G+ TVP VF+ G+HVGG D T   H  G+L  LL
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  122 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKT-VPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            S  +VV+F  + C  C  VK LF +LGV++   E++K+ +G D++ ALA   G+   VP VFIGGK VG  D   +LH  GKLVPLL EAGA+
Sbjct:   10 SQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGAL 102          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   59 RFRIKDKEDTEMALPKAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFK---AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            RF    K  ++  +   ++ +    V V +KT+CP+C  ++  LFQ+L V       +EL++ S+GS+IQ AL E +GQKTVPNV+I GKH+GG      L + GKL  +L
Sbjct:   28 RFLSTPKMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:   86 TEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTE 385
            T +A    ++ +S+N V VFSK+FCPFC + K    +    +KA EL+K  +GSDIQ+ L E T Q TVP++F   + +GG      L   G L  ++ E
Sbjct:    2 TSIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMIAE 101          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   86 TEMALPKAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFKAI---ELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLL 379
            ++  +   ++ ++ N + V SKT+CP+C  ++  LF++L V    +   +LN   +G+DIQ+AL E  GQ+TVPN++I GKH+GG D    L   G+L  LL
Sbjct:    3 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 104          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  110 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            Q+ +S  SVV+FSK  C    ++K LF  LGV     EL++ S G +I+ ALA+     TVP VFIGG+ VGG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 2
Query:   89 EMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQ-----KTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            E A  + +   S ++VVVFS + C  C +VK LF  +GV     EL+ +  G D++ ALA   G        VP VFIGGK VG  D   A H  G LVPLL EAGA+
Sbjct:   26 ETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   98 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQK-TVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            + +     +  +VV+FS + C  C +V  LF +LGV    +EL+++  G +++ ALA   G+   VP VFIGG+ VG  D   +LH  G LVPLL  AGA+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101          
BLAST of CK932589 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   98 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHVGGCDSTTALHREGKLVPLLTEAGAV 397
            + K Q+ +S  SVV+FSK  C    ++K LF   GV     EL++ + G +I+ ALA+     TVP VFIGG+ VGG +   +LH    LVP+L   GA+
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGAL 100          
The following BLAST results are available for this feature:
BLAST of CK932589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
GRXC8_ORYSJ1.786e-1642.39Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXS6_ORYSJ8.864e-1642.22Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC2_ORYSJ1.158e-1548.39Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GLRX2_YEAST1.512e-1539.64Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX2_SCHPO9.800e-1539.00Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX1_YEAST1.672e-1438.24Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GRXS3_ARATH3.724e-1444.79Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXC5_ORYSJ1.084e-1343.52Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC1_ORYSJ1.084e-1339.60Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXS4_ARATH1.848e-1341.00Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_H12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932589 ID=CK932589; Name=CK932589; organism=Citrus sinensis; type=EST; length=616bp
GGGGAAGTTCTCTCCTTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTAG
GGTTTGTGAGATTTCGAATCAAAGACAAAGAAGACACAGAAATGGCTTTG
CCCAAGGCCCAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAA
AACGTTTTGTCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCG
GAGTCACTTTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAGTGAC
ATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAAATGT
CTTCATCGGAGGGAAACACGTTGGTGGCTGCGATTCAACTACTGCACTGC
ACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCC
AAGACAGCTGCCTGATGGATGGCTATTGTCTGCCTGTTAATTCTAGTAAT
AAATAAAGAATGTGTTGGTAGTGCTTAATCTGTCTGAATTAAACATGAAA
TTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTT
TTATGTTGAAATCTGTATGAATTTTATCAGATTTTTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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