CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 50/112 (44.64%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++++ D  ++++GNK D   +R V+K+ G   A +YG  F+E SAK+  NV++ F  L   I+
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIM 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            +WDTAGQERF+T+T++YYRGA GII+VYD+T   +F N+ + W K I   + +    +LL+GNK D E++R V K++    ARE+G  F E SAK+ +NV + F  L   IL
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN-WMKSIK-ENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDIL 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDI 169          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 57/121 (47.11%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPS 354
            IWDTAGQERFRT+T++YYRGA GI++VYDVT   +F N+ + W + I+ ++++ +  K+LVGNK D  ES+R V   +G   A EYG  F E SAKT +NV++ F     ++  ++ DT S
Sbjct:   68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD-NVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDS 186          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFRT+T++YYRGA GI+++YDVT + +F N+   W   ++ ++ +++  K+L+GNK D E +R V+ ++G   A E G  F+E SAKT VNV + F  L  +I
Sbjct:   62 IWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR-TWFSNVEQHA-SENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 62/145 (42.76%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERF T+TSSYYRGA G ++VYDVT ++++ N+   W +EID ++ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P    A  GCC
Sbjct:   61 IWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQ-WLQEIDRHA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGA-ASGGERPNLKIDSTP-VKPAGGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.419e-22
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 354
            IWDTAGQERFR +TS+YYRGA G ++VYD+TRR TF ++   W  E+ ++S +    ++LVGNK D E+ R V+ +EG   A E G  F+E SA    NV+  FE ++L I +  S
Sbjct:   65 IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGR-WLDELKIHS-DTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVS 178          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB8B_HUMAN3.330e-2244.64Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB13_MESAU3.330e-2247.32Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB8A_BOVIN4.350e-2245.95Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
ARA3_ARATH4.350e-2247.11Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPT2_SCHPO5.681e-2246.85GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_MACFA5.681e-2245.95Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN5.681e-2245.95Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA5.681e-2245.95Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB1C_HUMAN5.681e-2242.76Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
ARA1_ARATH7.419e-2247.41Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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