CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            +WDTAGQERF+T+T++YYRGA GII+VYD+T   +F N+ + W K I   + +    +LL+GNK D E++R V +++    ARE+   F E SAK+ VNV + F  L   IL
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN-WMKSIK-ENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDIL 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPS 354
            +WDTAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   +L+GNKVD   ERVV +++G   A+EYG  F+E SAKT +NV   F    +EL  + +  PS
Sbjct:  117 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPS 234          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ---CFEELVLK 336
            IWDTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI     NQ+C    ++LVGNK D    +VV  ++   FA + G    E SAK  VNV++   C  ELVL+
Sbjct:   61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ---CFEELVLK 336
            IWDTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI     NQ+C    ++LVGNK D    +VV  ++   FA + G    E SAK  VNV++   C  ELVL+
Sbjct:   61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ---CFEELVLK 336
            IWDTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI     NQ+C    ++LVGNK D    +VV  ++   FA + G    E SAK  VNV++   C  ELVL+
Sbjct:   61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 318
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT   +F N+   W +EI  Y+ +    +LLVGNK D   +++V       +A   G  F+E SAK+  NV+Q F
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQ-WMQEIQRYACD-SVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAF 162          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 58/152 (38.16%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF---EELVL----KILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQER++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E +R V +++G   A+EYG  F E SA T +N+++ F    ELVL    K L+   + A     L +   ++  PE  A +S  C
Sbjct:   61 IWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYAP-EGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELEGLRMRASNELALAELEEEEGKPEGPANSSKTC 210          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEG 369
            IWDTAGQER++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E +R V +++G   AREYG  F E SA T +N+++ F  L   +L       EG
Sbjct:   61 IWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYAP-EGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELEG 179          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 59/152 (38.82%), Postives = 88/152 (57.89%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF---EELVL----KILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQER++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E +R V +++G   A+EYG  F E SA T +N+++ F    ELVL    K LD     A     L +    +  PE  A +S  C
Sbjct:   61 IWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYAP-EGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELDGLRTRASNELALAELEEDEGKPEGPANSSKTC 210          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.827e-20
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + + +Q+ + +L GNK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILN 171          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB13_MOUSE2.819e-2146.43Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB26_HUMAN3.682e-2145.00Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB35_RAT6.281e-2148.28Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE6.281e-2148.28Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN6.281e-2148.28Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB1B_DICDI8.203e-2150.96Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB15_HUMAN1.071e-2038.16Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN1.071e-2041.32Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB15_MOUSE1.399e-2038.82Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB4A_MOUSE1.827e-2045.13Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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