CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 327
            +WDTAGQERFRT+T++YYRGA GI+++YDVT   +F N+ + W + +  ++ N+D    LVGNK D E  R V+K++G   A +    F+E SAK+  NV   F EL
Sbjct:   67 VWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVEN-WFQTVTQHA-NEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYEL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + + +Q+ + +L GNK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILN 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + + +Q+ + +L GNK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + + +Q+ + +L GNK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + + +Q+ + +L GNK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.117e-20
Identity = 49/128 (38.28%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 390
            IWDTAGQER++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E +R V +++G   A+EYG  F E SA T +N+++ F  L   +L       +G +    N
Sbjct:   61 IWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYAP-EGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELDGLRTCASN 186          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.317e-20
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL------DTPSLLAEGSKGLKKNIFKQK 405
            IWDTAGQERFRT+TSS+YRGA G+++ YDVT + T+ N+  +W +EI  Y+      ++LVGNK D E  ++V       +A   G  F+E SA T VNV++ F  +  +I         PS++  GS G      K+K
Sbjct:   59 IWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVR-LWMQEIQRYAV-LGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVNPGSGGTSNTGGKKK 195          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.317e-20
Identity = 56/145 (38.62%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQER+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+     + + +  L GNK D  S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+       A G+ G  + +  Q+     A+ S CC
Sbjct:   74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQ-RQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQE--NNPASRSQCC 214          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.317e-20
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQER+R +TS+YYRGA G ++VYDVTRR TF N+ D W KE+  + T+ + + +LVGNK D      V  ++G ++A +    F+E SA    NV+  F E++ +I
Sbjct:   66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENV-DRWLKELKNH-TDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQI 174          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20
Identity = 53/145 (36.55%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFR L   YYRG+   I+VYD+T+ +TF+ L + W KE+  +    + +  + GNK D    R V +++  ++A     +F+E SAK  +N+ + F E+  +I  T + L  G KG K    +++P E   +   CC
Sbjct:   58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVKELRQHGP-PNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANLPSGGKGFK---LRRQPSEPKRS---CC 194          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
SEC4_CANAL2.387e-2046.73Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB4A_RAT2.387e-2045.13Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN2.387e-2045.13Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_DANRE2.387e-2045.13Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB4A_BOVIN2.387e-2045.13Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB15_RAT3.117e-2038.28Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RABG2_DICDI5.317e-2041.01Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB5C_BOVIN5.317e-2038.62Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAA1B_ARATH5.317e-2045.95Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB22A_HUMAN9.070e-2036.55Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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