CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +L+        L S N   + +L GNK D + ER VT  E   FA+E   +F+E SA T  NV++ F +    IL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +L+        L S N   + +L GNK D + ER VT  E   FA+E   +F+E SA T  NV++ F +    IL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +L+        L S N   + +L GNK D + ER VT  E   FA+E   +F+E SA T  NV++ F +    IL+
Sbjct:   61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB21_CANFA (Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = 1
Query:    4 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL--LAEGSKGLKKNIFKQ------KPPEADAAASGCC 441
            AIWDTAGQERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T  +   A+G+   +    ++        P+A ++  GCC
Sbjct:   69 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGAARRGVQIIDDEPQAQSSGGGCC 220          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB21_BOVIN (Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 1
Query:    4 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL--LAEGSKGLKKNIFKQ------KPPEADAAASGCC 441
            AIWDTAGQERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNKVD E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T  +   A+G+   +    ++        P+A +   GCC
Sbjct:   68 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKVDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGAARRGVQIIDDEPQAQSVGGGCC 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 318
            IWDTAGQERFRT+TSS+YRGA G+++ YDVT + T+ N+  +W +EI  Y       ++LVGNK D E  ++V       +A   G  FIE SA T VNV++ F
Sbjct:   60 IWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVG-LWMQEIQRYGV-LGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAF 161          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB21_HUMAN (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 53/154 (34.42%), Postives = 84/154 (54.55%), Query Frame = 1
Query:    4 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL--LAEGSKGLKKNIFKQ------KPPEADAAASGCC 441
            AIWDTAGQERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T  +   A+G+   +    ++        P+A  +  GCC
Sbjct:   71 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCC 222          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQER+R +TS+YYRGA G ++VYDVTR  TF N+ + W KE+  + T+ + + +LVGNK D      V  ++  +FA +    F+E SA    NV+  F E++ +I
Sbjct:   66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV-ETWLKELRNH-TDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQI 174          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.003e-18
Identity = 62/163 (38.04%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   10 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL-----DTPSLLAEGSKGLKKNIFKQKPPEADAA--------------ASGCC 441
            WDTAGQERFR +TS YYRGA G ++VYD+T + +F N++  W  E+      QD + ++VGNK D E  R V  KE   FA      F+E SA    NV Q FE L+  I        P ++ +    L  N  K+  P +D A               SGCC
Sbjct:   64 WDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTR-WLNEL-REMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQLTANTTSTHQEKKSGCC 224          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.003e-18
Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQER+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+     + + +  L GNK D  ++R V  ++   +A +   LF+E SAKT +NV + F  +  K+       A G  G  + +  Q+   +  + S CC
Sbjct:   74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKN-WVKELQ-RQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQE--SSQPSRSQCC 214          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB4B_MOUSE5.879e-1946.02Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN5.879e-1946.02Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA5.879e-1946.02Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB21_CANFA5.879e-1934.42Ras-related protein Rab-21 OS=Canis familiaris GN=... [more]
RAB21_BOVIN5.879e-1935.06Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 ... [more]
RABG1_DICDI7.678e-1948.08Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB21_HUMAN7.678e-1934.42Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2... [more]
RAA1C_ARATH7.678e-1944.14Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11C_DICDI1.003e-1838.04Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB5C_CHICK1.003e-1836.55Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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