CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 67/145 (46.21%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT R+++ N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P    A  GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA-ASGGERPNLKIDSTP-VKPAGGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 67/156 (42.95%), Postives = 95/156 (60.90%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-----KNIFKQ--KPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   ++ N +   +L+GNK D    R VT +EG  FA+E+G +F+E SA+T  NV++ F    +E+  KI D    ++  S G+K      N   Q  KP E DA  S  C
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+++ +  KLLVGNK D  + +VV  +    FA E G  F+E SAK   NVQQ F  +   I D
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASD-NVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKD 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYD T  ++F N+   W  EID Y+ N+   KLL+GNK D    +VV+ + G   A E G  F+E SAK  +NV+Q F  +  +I          +K       + K         GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQ-WLSEIDRYA-NESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGCC 203          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD--------TPSLLAEGSKGLKKNIFKQKPPEAD 420
            IWDTAGQER+RT+T++YYRGA G I++YDVT  D+F ++ D W  +I  YS +   + +LVGNK D E +RV++ + G   A + G  F E SAK  VNV+  FE LV  I D         P+L+  G KG +     Q  P A+
Sbjct:   74 IWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQD-WVTQIKTYSWDNAQV-ILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGGQKGQRLTDQPQGTPNAN 217          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N+S  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:   62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N+S  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:   62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N+S  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:   62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N+S  W + ID ++ N+D  ++L+GNK D E +RVV K +G   ARE+   F E SAK  +N+++ F  L   IL
Sbjct:   62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDIL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF T+T+SYYRGA GI++VYD+T   +F N+S  W + ID ++ N+D  ++L+GNK D + +RVV K +G   ARE+G  F E SAK  +N+++ F  L   IL
Sbjct:   62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDIL 171          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB1B_MACFA1.223e-2446.21Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
YPTV4_VOLCA1.597e-2442.95GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTM2_MAIZE1.597e-2453.98GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RABD1_ARATH1.597e-2443.45Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB3_DROME1.597e-2443.84Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB10_PONAB1.597e-2450.00Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.597e-2450.00Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.597e-2450.00Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_DISOM1.597e-2450.00Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB10_CANFA1.597e-2450.00Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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