CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            I DTAGQE +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  S  V TK +  + AR YG  FIE SAKTR  V+  F  LV +I
Sbjct:   55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSRSVDTK-QAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RASN_PONAB (GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            I DTAGQE +  +   Y R  +G++ V+ +    +F +++ ++ ++I     + D   +LVGNK D  + R V  K+    A+ YG  FIE SAKTR  V+  F  LV +I
Sbjct:   55 ILDTAGQEEYSAMRDQYMRTGEGLLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 357
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+   W K  DL    ++   +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct:   63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPS-WHK--DLVRVCENIPIVLCGNKVDIKDMKV--KAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNL 174          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 40/127 (31.50%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK----------KEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPS 354
            +WDTAGQE +  +    YRGA   I+ + +  R +F N++  W  E+  Y+     +  LVG K D        K          ++G    +E G L +IECS+K ++NV+  F+E +  +L  PS
Sbjct:   70 LWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIV--LVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQMNVKAVFDEAIKVVLHPPS 194          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 342
            +WDTAGQE F  +T +YYRGAQ  ++V+  T R++F  +S  W +++   +   D    LV NK+D   +  +  +E    A+     F   S K  +NV + F+ L  K L
Sbjct:   62 LWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 170          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 357
            +WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K+   PSL
Sbjct:   60 VWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPSL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 357
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L
Sbjct:   60 VWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAA 429
            +WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P L    S  L        PPE    A
Sbjct:   60 VWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPAL-------APPEVQVDA 188          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 357
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L
Sbjct:   60 VWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLA-EGSKGLKKN 390
            I DTAGQE +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  + R V  K+  + AR +G  FIE SAKTR  V   F  LV +I      ++ EG K  KK+
Sbjct:   55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPT-RTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKEGKKKKKKS 181          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAS_CARAU5.892e-1136.94Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RASN_PONAB5.892e-1135.14GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1[more]
RANT_RAT5.892e-1137.61GTP-binding nuclear protein Ran, testis-specific i... [more]
RAC9_ARATH5.892e-1131.50Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAB23_MOUSE5.892e-1133.93Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
GSP1_YARLI5.892e-1136.75GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
GSP1_CANGA5.892e-1136.75GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
GSP1_CANAL5.892e-1134.04GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
GSP1_ASHGO5.892e-1136.75GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
RASK_ORYLA7.696e-1134.11GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top