CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+ +++  KLLVGNK D   ++VV  +    FA E G  F+E SAK   NV+Q F  +  +I
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLAEIDRYA-SENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D   LLVGNK+D E++R +T+++G  FA E  G  F E SAK   NV + F +LV  IL
Sbjct:   59 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVDDIL 169          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 54/120 (45.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPS 354
            IWDTAGQERFRT+T++YYRGA GI++VYDVT   +F N+ + W + I+ ++T+    K+L+GNK D   ++VV    G + A EYG  F+E SAK  +NV++ F    +++  +++DTP+
Sbjct:   68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRN-WIRNIEQHATD-SVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPN 185          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGL---KKNI-FKQKPP 411
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +LVGNK D E ERV++ + G +   + G  F E SAK  +NV+Q FE LV  I D  S   E    +   K+N   K+ PP
Sbjct:   83 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPP 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 53/104 (50.96%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 318
            IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S++ + + +L+GNK D ES R V ++EG  FARE+G +F+E SAKT  NV++ +
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSS-NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAY 160          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +D+F N+   W +EID Y+  +   +LLVGNK D   ++VV       FA      F+E SAK   NV+Q F  +  +I +        S   K ++   +      ++S CC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQ-WLQEIDRYAV-EGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 58/113 (51.33%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D   LLVGNK+D E++R +T+++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct:   95 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 205          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+  ++  KLLVGNK D  ++RVV+      FA   G  F+E SAK   NV++ F  +  +I
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLHEIDRYAC-ENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 354
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 354
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
YPTV1_VOLCA1.035e-2353.15GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB12_CANFA1.035e-2352.21Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
RAB8A_DICDI1.352e-2345.00Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB3C_HUMAN1.352e-2343.88Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB2B_MOUSE1.352e-2350.96Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
YPT1_SCHPO1.766e-2342.76GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB12_HUMAN1.766e-2351.33Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
YPT1_PHYIN2.306e-2352.25Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB3B_MOUSE2.306e-2349.14Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU2.306e-2349.14Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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