CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 345
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F ++ D W  +I  YS  ++   +LVGNK D +SERVV+   G   A + G  F E SAK  +NV+  FE+LV  I D
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQD-WCTQIKTYSW-ENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICD 185          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 61/141 (43.26%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAA 429
            IWDTAGQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV  I +  +   E S     N   + P   DA A
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSN--GKGPAVGDAPA 211          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGL----KKNIFKQKPP 411
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +L GNK D E ERVV+ + G     + G  F E SAK  +NV+Q FE LV  I D  S   E    +    +    K+ PP
Sbjct:   83 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQSTRLKETPP 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGL----KKNIFKQKPP 411
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +L GNK D E ERVV+ + G     + G  F E SAK  +NV+Q FE LV  I D  S   E    +    +    K+ PP
Sbjct:   83 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQSTRLKETPP 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR++T +YYR A  ++++YD+T +D+F N+   W  EI  Y+  QD + +L+GNKVD   ERVV +++G   A+EYG  F+E SAK+ +NV   F  +  ++
Sbjct:  118 IWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNI-QAWLTEIQEYA-QQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKEL 226          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 53/120 (44.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPS 354
            IWDTAGQERFRT+T++YYRGA GI++VYDVT   +F ++ + W + I+ ++++    K+L+GNK D   ++VV    G + A EYG  F+E SAK  VNV++ F    +++  +++DTP+
Sbjct:   68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRN-WIRNIEQHASD-SVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTPN 185          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 318
            IWDTAGQERFR++T +YYR AQ ++++YD+T + +F N+   W  EI  Y+  +D + +L+GNK D  SERV+  ++G   AREYG  F+E SAKT +NV+  F
Sbjct:   83 IWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIR-AWLTEIHEYA-QRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAF 184          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR++T +YYR A  ++++YD+T +D+F N+   W  EI  Y+  QD + +L+GNKVD   +RVV +++G   A+EYG  F+E SA+T +NV   F  +  ++
Sbjct:  121 IWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNI-QAWLTEIQEYA-QQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKEL 229          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEG------SKGLKKNIFKQK 405
            IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I        EG      S G+K  + +QK
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQK 197          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEG------SKGLKKNIFKQK 405
            IWDTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++GNK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I        EG      S G+K  + +QK
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQK 197          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB3_CAEEL6.711e-2348.67Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3D_HUMAN6.711e-2343.26Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3C_RAT6.711e-2342.45Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE6.711e-2342.45Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB26_RAT6.711e-2345.95Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB8B_DICDI1.145e-2244.17Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB37_HUMAN1.145e-2249.04Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB26_MOUSE1.145e-2245.05Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB8A_RAT1.495e-2241.73Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE1.495e-2241.73Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top