CK932628

Overview
NameCK932628
Unique NameCK932628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK932628 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/159 (28.93%), Postives = 70/159 (44.03%), Query Frame = 1 
Query:  403 QNGKFSYGYASSPGKRSSMEDFYETRIDGVEG-EIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKF--------ISDTKSAIADAYSHTDSEFP-KSENNQNRD-AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPEQTDERQRIE 846
            Q     YG +S  G R  MED +   I    G E    F V+DGH G++ A+Y   +L  ++  +  F        + + K+ I   +   D      SE     D +GSTA   ++        N GDSR ++CR       ++DHKP    E++RI+
Sbjct:   18 QGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQ 176
[Close]
BLAST of CK932628 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/159 (28.93%), Postives = 70/159 (44.03%), Query Frame = 1 
Query:  403 QNGKFSYGYASSPGKRSSMEDFYETRIDGVEG-EIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKF--------ISDTKSAIADAYSHTDSEFP-KSENNQNRD-AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPEQTDERQRIE 846
            Q     YG +S  G R  MED +   I    G E    F V+DGH G++ A+Y   +L  ++  +  F        + + K+ I   +   D      SE     D +GSTA   ++        N GDSR ++CR       ++DHKP    E++RI+
Sbjct:   18 QGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQ 176
[Close]
BLAST of CK932628 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/159 (28.93%), Postives = 70/159 (44.03%), Query Frame = 1 
Query:  403 QNGKFSYGYASSPGKRSSMEDFYETRIDGVEG-EIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKF--------ISDTKSAIADAYSHTDSEFP-KSENNQNRD-AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPEQTDERQRIE 846
            Q     YG +S  G R  MED +   I    G E    F V+DGH G++ A+Y   +L  ++  +  F        + + K+ I   +   D      SE     D +GSTA   ++        N GDSR ++CR       ++DHKP    E++RI+
Sbjct:   18 QGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFRGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQ 176
The following BLAST results are available for this feature:
BLAST of CK932628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PPM1A_RAT8.887e-1128.93Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT8.887e-1128.93Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_MOUSE8.887e-1128.93Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_F02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932628 ID=CK932628; Name=CK932628; organism=Citrus sinensis; type=EST; length=851bp
GAGGGGAATCACTATTGAATTCATCATCGTCGTCATAGTCTCTCTTTCTA
AAACTTCCTCTCTCGTCTTTTTCTTCTTTGTAACGCGTTTTAAACGCGCC
GTATCTTTTCTTTTATTTTCTTTTTCTCTGTTATGGCATTTCTTTTCACT
TCTCTTCTTCAGGTTGAGCTTGATAATTCGTGACATTGAAATGATCTAAC
GAATGTGCAATCACCTATTGTAACTAACCAAAACGCTGTCGCTGCTGTAG
TTATTGCTTTCGTTGTTATTAATTTATTTTCTCTTCCGAGTGGTTAACGA
ATTGGAACTTGAAGCGAAACCATGGGGTATTTGAACTCGGTGTTGTCATC
TTCAAGCCAGGTTCACGCCGATGATTCGCCGGCTAGCGGCGGGGGCCTTA
GTCAGAACGGAAAGTTCAGCTACGGATATGCGAGTTCTCCTGGCAAGAGG
TCTTCTATGGAAGATTTTTATGAGACCAGAATTGATGGCGTCGAAGGAGA
GATAGTAGGCCTCTTTGGAGTTTTTGATGGTCATGGGGGTGCACGGGCTG
CTGAGTATGTGAAACACAACCTCTTCAGCAATCTGATCAGGCATCCAAAG
TTCATATCTGATACCAAATCGGCAATAGCTGATGCATACAGCCACACAGA
CTCGGAATTTCCGAAGTCAGAAAACAATCAAAACAGGGATGCTGGATCTA
CTGCTTCCACTGCCATCCTTGTTGGTGATCGCTTACTTGTTGCAAATGTG
GGTGACTCCAGAGCTGTTATATGCAGGGGCGGTAATGCTATTGCCGTATC
GCGAGATCACAAACCAGAACAAACAGATGAGCGTCAACGGATTGAGNNNN
N
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