CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10863 contig Csv1_Contig10863:173..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 1.060e-62
Identity = 121/191 (63.35%), Postives = 150/191 (78.53%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFN 728
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I+S+K M   + ++ D S  N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM--SDRRENDMSPSN 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 1.060e-62
Identity = 121/191 (63.35%), Postives = 150/191 (78.53%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFN 728
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I+S+K M   + ++ D S  N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM--SDRRENDMSPSN 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 1.060e-62
Identity = 121/191 (63.35%), Postives = 150/191 (78.53%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFN 728
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I+S+K M   + ++ D S  N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM--SDRRENDMSPSN 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.060e-62
Identity = 121/191 (63.35%), Postives = 150/191 (78.53%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFN 728
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I+S+K M   + ++ D S  N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM--SDRRENDMSPSN 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 1.060e-62
Identity = 121/191 (63.35%), Postives = 150/191 (78.53%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFN 728
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I+S+K M   + ++ D S  N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM--SDRRENDMSPSN 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 240.35 bits (612), Expect = 1.060e-62
Identity = 115/188 (61.17%), Postives = 150/188 (79.79%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSS 719
            D+  DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+   + GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++RQTFD++ RWL EL  H+D N+V ++ GNKSDL   R V   +G++LAE +GL F+ETSAL+++NV  AFQT++ EIY+I+S+K + +QE    +S+
Sbjct:    6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSA 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.362e-62
Identity = 117/195 (60.00%), Postives = 149/195 (76.41%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTV 740
            D   DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+ + + GK VKAQIWDTAGQER+RA+TSAYYRGAVGALL YDI++RQTFD++ RWL EL  H D N+V IL GNKSDLK  R V+  + +AL + +GL F+ETSAL++ NV  AFQT++T+IY+I+S+K + +QE     +    G T+
Sbjct:    6 DHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTI 200          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 4.029e-62
Identity = 113/181 (62.43%), Postives = 148/181 (81.77%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 698
            D    YLFK+VLIGDS VGKSN+L+RF R+ F  +SKSTIGVEF T+ + + GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++RQ+FD++ RWL EL  H+D ++V ++VGNKSDL   R V+  EGKALAE +GLFF+ETSA+++ NV  AFQT++TE+Y I++RK + ++E
Sbjct:    6 DHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKE 186          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 5.262e-62
Identity = 120/191 (62.83%), Postives = 149/191 (78.01%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFN 728
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE  GL F+ETSALD +NV AAFQT++TEIY I+S+K M   + ++ D S  N
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQM--SDRRENDMSPSN 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.873e-62
Identity = 116/181 (64.09%), Postives = 148/181 (81.77%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQK 710
            DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  TF+++ RWL EL  H+D N+V +LVGNKSDLK  R+V T   +A  E +GL F+ETSAL+S+NV  AFQ ++TEIY+I+S+KV+ S++ + K
Sbjct:   10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPK 190          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_PIG1.060e-6263.35Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE1.060e-6263.35Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.060e-6263.35Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK1.060e-6263.35Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA1.060e-6263.35Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RAA2C_ARATH1.060e-6261.17Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11A_TOBAC2.362e-6260.00Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ4.029e-6262.43Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11A_BOVIN5.262e-6262.83Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
YPTC6_CHLRE6.873e-6264.09Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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