CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 81/157 (51.59%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 638
            DYLFK++LIGDS+VGKS  L RFA D +  +  STIGV+F+ + +++ GK VK QIWDTAGQERFR +TS+YYRGA G ++VYDI+  ++F+++ +WL+E+  +++ +V  +LVGNK DL + R V T+  +A A+  G+ F+ETSA +S NV  AF
Sbjct:    6 DYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAF 162          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 82/164 (50.00%), Postives = 117/164 (71.34%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK VK QIWDTAGQERFR +TS+YYRGA G  +VYD++   +F+++ +WL E+  ++   V  +LVGNKSD+ D + V     K  A++ G+ F+ETSA ++SNV  AF T+  +I
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 81/165 (49.09%), Postives = 118/165 (71.52%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            DYL K++LIGDS VGKS LL RF+   F  +  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++   +F++I  W+  +  H+  NV  ILVGNK+D+ ++ R V TA+G+ALA+  G+ F ETSA  + NV   F ++  +I
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 79/166 (47.59%), Postives = 118/166 (71.08%), Query Frame = 3
Query:  162 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            A D+L K++LIGDS VGKS LL RF+   F P+  +TIG++F+ + +++ GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++  ++F SI  W+  +  H+  +V  +L+GNK D+ + + V ++ GK+LA+  G+ F+ETSA +S NV  AF  +  +I
Sbjct:   11 AYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDI 176          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 80/164 (48.78%), Postives = 118/164 (71.95%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ + +F+++ +WL E+  ++  NV  +LVGNK DL   + V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 82/172 (47.67%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  147 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 659
            S ED   D+LFK++LIGDS VGK+ ++ RF    F  N ++TIGV+F  + ++INGK+VK Q+WDTAGQERFR +T +YYR A GA++ YDI+RRQ+F+S+  W+ E   +   N++ +L+GNKSDL + R++   E   LAE  GL   +ETSA +S NV   F  +  E+
Sbjct:    6 SLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKEL 177          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 83/170 (48.82%), Postives = 120/170 (70.59%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 674
            DYL K++LIGDS VGKS LL RF+   F  +  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++   +F++I  W+  +  H+  NV  ILVGNK+D+ ++ R V TA+G+ALA+  G+ F ETSA  + NV   F ++  +I   LS
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLS 182          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.335e-40
Identity = 80/164 (48.78%), Postives = 118/164 (71.95%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQER R +TS+YYRGA G ++VYD++ ++++ ++ +WL E+  ++  NV  +LVGNKSDL   + V     K  A++ G+ F+ETSA +++NV  AF T+  EI
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.662e-40
Identity = 84/166 (50.60%), Postives = 110/166 (66.27%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 665
            D+LFK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +  T +  N+V IL GNK DL   REVT  E    A+   L F+ETSAL   NV  AF      I N
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSIPN 171          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.657e-40
Identity = 83/166 (50.00%), Postives = 110/166 (66.27%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 665
            D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL   REVT  E    A+   L F+ETSAL   NV  AF     +I N
Sbjct:    6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILN 171          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTM1_MAIZE3.319e-4051.59GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPT1_NEUCR3.319e-4050.00GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RB1BV_BETVU3.319e-4049.09Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8B_DICDI3.319e-4047.59Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1A_PIG3.319e-4048.78Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB19_XENLA3.319e-4047.67Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
ARA3_ARATH3.319e-4048.82Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB1B_PIG4.335e-4048.78Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB4B_DANRE5.662e-4050.60Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB4A_RAT9.657e-4050.00Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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