CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.261e-39
Identity = 83/166 (50.00%), Postives = 110/166 (66.27%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 665
            D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL   REVT  E    A+   L F+ETSAL   NV  AF     +I N
Sbjct:    6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 171          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.647e-39
Identity = 83/166 (50.00%), Postives = 110/166 (66.27%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 665
            D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL   REVT  E    A+   L F+ETSAL   NV  AF     +I N
Sbjct:    6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 171          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.647e-39
Identity = 83/193 (43.01%), Postives = 129/193 (66.84%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGK 734
            D+  DY+FK++LIG+S+VGK++ L R+A D F P   ST+G++F+ + +  + K +K QIWDTAGQER+R +T+AYYRGA+G LL+YDI+ +++F ++  W  ++ T+S  N   ILVGNK DL+D R V   +G+ LA+  G  F E SA ++ NV   F+ +V    +++  K  +++ L+   SS  NGK
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV----DVICEK--MNESLEPSSSSGSNGK 202          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.647e-39
Identity = 79/169 (46.75%), Postives = 121/169 (71.60%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 674
            D+ FK++LIGDS VGKS LL RFA D +     STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G +LVYD + + +F ++ +W+ E+  ++  NV  +LVGNK+DL + + V + + K+ AE+ G+ F+ETSA +++NV   F ++  +I N L+
Sbjct:    8 DFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLA 176          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.647e-39
Identity = 77/167 (46.11%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  159 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK++K Q+WDTAGQERF+ +T+AYYRGA+G +LVYDI+  ++F++I  W+  +  ++   V  +L+GNK D++  R+V   +   LA   G+ F ETSA  S NV  AF ++  +I
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.647e-39
Identity = 77/167 (46.11%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  159 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK++K Q+WDTAGQERF+ +T+AYYRGA+G +LVYDI+  ++F++I  W+  +  ++   V  +L+GNK D++  R+V   +   LA   G+ F ETSA  S NV  AF ++  +I
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.151e-39
Identity = 82/166 (49.40%), Postives = 110/166 (66.27%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 665
            D+LFK ++IG++  GKS LL +F   +F  +S  TIG+EF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL   REVT  E    A+   L F+ETSAL   NV  AF     +I N
Sbjct:    6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILN 171          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.151e-39
Identity = 79/164 (48.17%), Postives = 119/164 (72.56%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++   +F+++ +W+ E+  ++  +V  +LVGNK DL + + V T+  +  A++ G+ F+ETSA  S+NV  AF  + +EI
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGK 734
            D+  DY+FK++LIG+S+VGK++ L R+A D F P   ST+G++F+ + +  + K +K QIWDTAGQER+R +T+AYYRGA+G LL+YDI+ +++F ++  W  ++ T+S  N   ILVGNK DL+D R V   +G+ LA+  G  F E SA ++ NV   F+ +V  I +       +++ L+   S   NGK
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICD------KMNESLEPSSSPGSNGK 202          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 79/185 (42.70%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  138 AFYSEEDRAE---DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            A Y ++D ++   DY+FK+++IG+S+VGK++ L R+A D F     ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   ILVGNK D++D R ++T  G+ L E  G  F ETSA D+ NV   F+ +V  I + +S  +
Sbjct:   15 ARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_BOVIN1.261e-3950.00Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB4A_HUMAN1.647e-3950.00Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB3D_HUMAN1.647e-3943.01Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB1D_DICDI1.647e-3946.75Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB13_HUMAN1.647e-3946.11Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN1.647e-3946.11Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB4A_MOUSE2.151e-3949.40Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB1B_DICDI2.151e-3948.17Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB3D_MOUSE6.260e-3942.49Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3C_HUMAN6.260e-3942.70Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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