CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 79/185 (42.70%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  138 AFYSEEDRAE---DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            A Y ++D ++   DY+FK+++IG+S+VGK++ L R+A D F     ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   ILVGNK D++D R ++T  G+ L E  G  F ETSA D+ NV   F+ +V  I + +S  +
Sbjct:   15 ARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 76/176 (43.18%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D++D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I   +S  +
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 76/176 (43.18%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D++D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I   +S  +
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 76/176 (43.18%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D++D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I   +S  +
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 76/176 (43.18%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D++D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I   +S  +
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 76/176 (43.18%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D++D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I   +S  +
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 76/176 (43.18%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            D+  DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTAGQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D++D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I   +S  +
Sbjct:   16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 76/167 (45.51%), Postives = 114/167 (68.26%), Query Frame = 3
Query:  159 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + ++I GK +K Q+WDTAGQERF+ +T+AYYRGA+G +LVYDI+  ++F++I  W+  +  ++   V  +L+GNK D++  R+V   +   LA   G+ F ETSA  S NV  AF ++  +I
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 82/191 (42.93%), Postives = 126/191 (65.97%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQK-DSSSFNGKT 737
            D LFK++LIGDS VGK+ +L RF+ D F     STIG++ + + +++ GK++K QIWDTAGQERF  +T++YYRGA+G +LVYDI+  ++F++I +WL  +  H++ +V  +L+GNK D++D R V  A+G+ +A   G+ F ETSA  + N+  AF T+  +I     RK  + +   +  D SS  G T
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDIL----RKTPVKEPNSENVDISSGGGVT 193          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.176e-39
Identity = 76/167 (45.51%), Postives = 114/167 (68.26%), Query Frame = 3
Query:  159 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK +K Q+WDTAGQERF+ +T+AYYRGA+G +LVYDI+  ++F++I  W+  +  ++   V  +L+GNK D++  R+V   + + LA    + F ETSA  S NV  AF ++  +I
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3C_BOVIN6.260e-3942.70Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3A_RAT6.260e-3943.18Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG6.260e-3943.18Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE6.260e-3943.18Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA6.260e-3943.18Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN6.260e-3943.18Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN6.260e-3943.18Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB13_MESAU6.260e-3945.51Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB10_CHICK6.260e-3942.93Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB13_MOUSE8.176e-3945.51Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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