CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.976e-62
Identity = 117/202 (57.92%), Postives = 158/202 (78.22%), Query Frame = 3
Query:  144 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDS-SSFNGKTVVL 746
            Y +  +  DY+FKVVLIGDSAVGK+ +LARFAR+EF  +SK+TIGVEFQT+ + I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQTFD I RWL EL  H+D N+V +L GNK+DL+D R V T + K  A+ +GLFF+ETSA++++ +  AF TV+TEI+NI+++K + + E +   + +S  GK +++
Sbjct:    5 YGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILV 206          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.411e-61
Identity = 117/202 (57.92%), Postives = 154/202 (76.24%), Query Frame = 3
Query:  135 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTV 740
            MA Y  +D   DYLFK+VLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ ++I+GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  TF++ GRWL EL  H+D N+V +L+GNKSDL+    V+T +GKA AE + L+FMETSAL+++NV  AF  V+T+IY I+S++ + + +          G+T+
Sbjct:    1 MAGYKADDEY-DYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTI 201          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.296e-60
Identity = 118/181 (65.19%), Postives = 144/181 (79.56%), Query Frame = 3
Query:  138 AFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            A Y  ED   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  TF+++ RWL EL  H+D N+V +LVGNKSDL+    V T EGKA AE + L+FMETSAL+S+NV  AF  V+T+IY I+S++
Sbjct:    3 AGYRAEDDY-DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.402e-60
Identity = 112/195 (57.44%), Postives = 151/195 (77.44%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTV 740
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + + G+ VKAQIWDTAGQER+RA+TSAYYRGA+GALLVYD+++  TF+++ RWL EL  H+D N+V +L+GNK+DLK  R V T + ++ AE +GL F+ETSAL++ NV  AFQT+++E+Y I+S+K  IS +    +++   G+T+
Sbjct:    6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKK-SISSDQTTANANIKEGQTI 199          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.097e-59
Identity = 115/202 (56.93%), Postives = 154/202 (76.24%), Query Frame = 3
Query:  135 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTV 740
            MA Y  +D   DYLFK+VLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ ++I+ K +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  T++++ RWL EL  H+D N+V +L+GNKSDL+    V+T E K LAE +GL+FMETSAL+++NV  AF   +T+IY I+S+K + + +     S+   G+T+
Sbjct:    1 MAGYRADDEY-DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETI 201          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 230.335 bits (586), Expect = 1.097e-59
Identity = 113/175 (64.57%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 1.097e-59
Identity = 113/175 (64.57%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 230.335 bits (586), Expect = 1.097e-59
Identity = 113/175 (64.57%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 1.097e-59
Identity = 113/175 (64.57%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.097e-59
Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  135 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            MA Y  ED   DYLFKVVLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++RR TF+++ RWL EL  H+D N+V +LVGNKSDL+    V T +GK+ AE + L FMETSAL+++NV  AF  V+T+IY I S+K
Sbjct:    1 MAGYRVEDDY-DYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKK 181          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_TOBAC8.976e-6257.92Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RB11E_LOTJA3.411e-6157.92Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RIC2_ORYSJ1.296e-6065.19Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA2A_ARATH8.402e-6057.44Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPT3_NICPL1.097e-5956.93Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11B_RAT1.097e-5964.57Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.097e-5964.57Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.097e-5964.57Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN1.097e-5964.57Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAA1B_ARATH1.097e-5964.29Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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