CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.433e-59
Identity = 113/175 (64.57%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL+  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.446e-59
Identity = 111/195 (56.92%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTV 740
            D   DYLFK+VLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ ++++ K VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++RR TF++  RWL EL  H+D N+V +L+GNKSDL+    V T +GK+ AE + L+FMETSAL+++NV  AF  V+T+IY I+S++ + + +          G+T+
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTI 201          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.584e-58
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 686
            DYLFK+VLIGDS VGKSNLL+RF+R+EF   SKSTIGVEF T+ + ++ K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI+R  TF+++ RWL EL  H+D N+V +LVGNK+DL+  R V+T + KA AE +  FFMETSAL+S NV  AF  V+TEIY ++ RK +
Sbjct:   12 DYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKAL 184          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.530e-58
Identity = 111/184 (60.33%), Postives = 145/184 (78.80%), Query Frame = 3
Query:  135 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 686
            MA Y  +D   DYLFKVVLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ ++++ K +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  TF+++  WL EL  H+D N+V +LVGNKSDL+    V T + K+ AE + L+FMETSAL+++NV  AF  V+T+I++I+S+K M
Sbjct:    1 MAGYRADDEY-DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAM 183          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.610e-58
Identity = 109/171 (63.74%), Postives = 138/171 (80.70%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            DYLFK VLIGDS VGKSNLL RF R+EF   SKSTIGVEF T+ + ++ K++KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI+++ +FD++GRWL EL  H+D N+V +LVGNK+DL   R V+T E +A A    L F+ETSA+D+SNV  AFQTV+TEI+ I+S +
Sbjct:    8 DYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNR 178          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.903e-57
Identity = 108/175 (61.71%), Postives = 136/175 (77.71%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            D   DYLFK+VLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+   + GK VKAQIWDTAGQER+RA+TSAYYRGAVGALL+YD++R  TF++  RWL EL  H+D N+V +L+GNK DL+    V T E KA AE + L+FMETSALD++NV  AF  V+T+I+ I+S++
Sbjct:    7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKR 181          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.097e-57
Identity = 111/193 (57.51%), Postives = 146/193 (75.65%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVL 746
            DYL+K+VLIGDS VGKSNLL+RF R+EF   +KSTIGVEF T+ +   GK +KAQ+WDTAGQER+RA+TSAYYRGAVGALLVYDI+++ T+ S+ RW+ EL  ++D N+  +LVGNKSDL+  REV+T E K  +E   L F+ETSALDSSNV  AFQ ++T+IY+I+SR    S     + +   N +T++L
Sbjct:   11 DYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRP---SHSTGPQTTIDSNTETIIL 200          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 4.465e-53
Identity = 111/206 (53.88%), Postives = 143/206 (69.42%), Query Frame = 3
Query:  147 SEEDRAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM----ISQELKQKDSSSFNGKTVVL 746
            S ED   DY  LFK+VLIGDS VGKSNLL+RF ++EF  +SKSTIGVEF T+ ++I+GK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIS+  ++++   WL+EL  ++D NV   L+GNKSDL   R V T E K  A+   L F ETSAL+S NV  AF+ ++  IY  +S+  M     S       +S+ NG T+ L
Sbjct:    2 SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISL 207          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.832e-53
Identity = 104/180 (57.78%), Postives = 139/180 (77.22%), Query Frame = 3
Query:  159 RAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMIS 692
            + EDY  +FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H++  +V +LVGNKSDL  AREV T E +  AE  GL F+ETSALDS+NV  AF+TV+ EI+  +S+++  S
Sbjct:    5 KEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNS 184          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.299e-52
Identity = 103/178 (57.87%), Postives = 139/178 (78.09%), Query Frame = 3
Query:  147 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            +EED   +++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H++  +V +LVGNKSDL  AREV T E +  AE  GL F+ETSALDS+NV  AF+TV+ EI+  +S++
Sbjct:    5 TEEDY--NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_DISOM1.433e-5964.57Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11D_LOTJA5.446e-5956.92Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11B_TOBAC1.584e-5864.16Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH3.530e-5860.33Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_SCHPO4.610e-5863.74GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1A_ARATH3.903e-5761.71Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11A_DICDI5.097e-5757.51Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
YPT31_YEAST4.465e-5353.88GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RAB25_RABIT5.832e-5357.78Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN1.299e-5257.87Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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