CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.216e-52
Identity = 99/177 (55.93%), Postives = 142/177 (80.23%), Query Frame = 3
Query:  150 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            +E+ AE YLFK+V+IGDSAVGKSNLL RF R+EF   +K+TIGV+F T+ ++I+ K + AQ WDTAGQERFRAVTS YYRGAVGA++VYDI+ + +F ++ RWLNEL   ++ +++ ++VGNKSDL+ +REV T E +A AE+  + F+ETSAL+S+NV  +F+ ++T+IY+++S K
Sbjct:    3 QEEEAE-YLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.216e-52
Identity = 102/175 (58.29%), Postives = 135/175 (77.14%), Query Frame = 3
Query:  156 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            D   +++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H++  +V +LVGNKSDL  AREV T E    AE  GL F+ETSALDS+NV  AFQTV+ EI+  +S++
Sbjct:    6 DEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQ 180          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.780e-52
Identity = 101/178 (56.74%), Postives = 139/178 (78.09%), Query Frame = 3
Query:  156 DRAED---YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 680
            +RAE+   ++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    +KAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H++  +V +LVGNKSDL  +REV T E +  AE  GL F+ETSALDS+NV  AF+TV+ EI+  +S++
Sbjct:    3 NRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 1.588e-50
Identity = 98/170 (57.65%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSR 677
            DYLFK+VLIGDS VGKSNLL+RF  DEF   SKSTIGVEF T+ +++  K++KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIS+  ++++   WL EL  ++D NV   L+GNKSDL   R V T E K  A    + F ETSAL+S NV  AF+ ++  I+ ++S+
Sbjct:   11 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 180          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.373e-46
Identity = 93/190 (48.95%), Postives = 130/190 (68.42%), Query Frame = 3
Query:  132 KMAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNIL-SRKVMISQE 698
            K  F   +  + ++LFK +++GDSAVGKSNLL +F    F PNS  TIGVEF ++ ++IN K++K QIWDTAGQE+FR++T AYYRGAV A++VYDI+RR +F+S+  WL +    S  +V T+L+GNK+DL+  R+V+T+E K  AE  GL F ETSA  + NV  AF+    +I   L S   ++S E
Sbjct:   10 KPTFNDRKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLLSNE 199          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.178e-45
Identity = 92/171 (53.80%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF+ +  WL +   HS+ N+V +L+GNKSDL+  REV   EG+A A   GL FMETSA  +SNV  AF     EIY  +   V
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.178e-45
Identity = 92/171 (53.80%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF+ +  WL +   HS+ N+V +L+GNKSDL+  REV   EG+A A   GL FMETSA  +SNV  AF     EIY  +   V
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.178e-45
Identity = 92/171 (53.80%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF+ +  WL +   HS+ N+V +L+GNKSDL+  REV   EG+A A   GL FMETSA  +SNV  AF     EIY  +   V
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.178e-45
Identity = 92/171 (53.80%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF+ +  WL +   HS+ N+V +L+GNKSDL+  REV   EG+A A   GL FMETSA  +SNV  AF     EIY  +   V
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.178e-45
Identity = 92/171 (53.80%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF+ +  WL +   HS+ N+V +L+GNKSDL+  REV   EG+A A   GL FMETSA  +SNV  AF     EIY  +   V
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_DICDI2.216e-5255.93Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB25_MOUSE2.216e-5258.29Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_BOVIN3.780e-5256.74Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
YPT32_YEAST1.588e-5057.65GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB2B_DICDI2.373e-4648.95Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB2A_RABIT1.178e-4553.80Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB1.178e-4553.80Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE1.178e-4553.80Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA1.178e-4553.80Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN1.178e-4553.80Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
back to top