CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.463e-44
Identity = 84/172 (48.84%), Postives = 124/172 (72.09%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+ D R+V+   G+ LA   G+ F+ETSA  S+NV  AF T+  +I   L+RK+
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKM 177          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.463e-44
Identity = 84/172 (48.84%), Postives = 124/172 (72.09%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+ D R+V+   G+ LA   G+ F+ETSA  S+NV  AF T+  +I   L+RK+
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKM 177          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.102e-43
Identity = 86/164 (52.44%), Postives = 113/164 (68.90%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 662
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF+ +  WL +   H++ N+  +L+GNK DL   R VTT EG+  A+  GL F+ETSA  + NV  AF     EIY
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIY 168          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.102e-43
Identity = 86/164 (52.44%), Postives = 113/164 (68.90%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 662
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF+ +  WL +   H++ N+  +L+GNK DL   R VTT EG+  A+  GL F+ETSA  + NV  AF     EIY
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIY 168          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.102e-43
Identity = 82/167 (49.10%), Postives = 123/167 (73.65%), Query Frame = 3
Query:  159 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            ++ DYL K++LIGDS VGKS LL RF+ D F P+  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LL+YD++ +++FD++  W + +  H+  NV  IL+GNK D +D R+V+  +G+ALA+  G+ F+E SA  + NV  AF T+  EI
Sbjct:    4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.207e-43
Identity = 89/183 (48.63%), Postives = 132/183 (72.13%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDS 716
            DYLFK++LIGDS+VGKS LL RFA D +  +  STIGV+F+ + ++ +GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD +  ++F+++ +WL+E+  +++ +V  +L+GNK+D+ +++ V+T  G+ALA+  G+ F+ETSA DS NV  AF T+  EI     +K M SQ    K S
Sbjct:    6 DYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEI-----KKKMGSQTNANKTS 183          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.189e-43
Identity = 88/189 (46.56%), Postives = 131/189 (69.31%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGK 734
            DYLFK++LIG+S VGKS LL RF+ D +  +  STIGV+F+ + ++++GK VK QIWDTAGQERFR +TS+YYRG+ G ++VYD++ +++F+ +  WL E+  ++   V+ +LVGNK DLKD R V     K  A+A  + F+ETSALDS+NV  AF T+  +I   +S++ +     K++D  + N K
Sbjct:    6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLK 194          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.189e-43
Identity = 83/172 (48.26%), Postives = 122/172 (70.93%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+ D R+V+   G+ LA   G+ F+E SA  S NV  AF T+  +I   L+RK+
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKM 177          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.471e-43
Identity = 85/166 (51.20%), Postives = 123/166 (74.10%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 665
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F+++ +WLNE+  ++  NV  +LVGNKSDL   + V  +  KA A+  G+ F+ETSA +++NV  AF T+  EI N
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKN 171          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.146e-43
Identity = 88/171 (51.46%), Postives = 119/171 (69.59%), Query Frame = 3
Query:  150 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 659
            ++D   D+LFK+VL+GD++VGK+ ++ RF    F     STIGV+F  + ++I GK VK QIWDTAGQERFR +T +YYR A GA+L YDIS+R TF S+  W+ ++  ++  N+V +L+GNKSDL D REV  AE ++LAE    L  +ETSA DSSNV  AF  V TE+
Sbjct:    8 DQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_MOUSE6.463e-4448.84Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN6.463e-4448.84Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
YPTV4_VOLCA1.102e-4352.44GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.102e-4352.44GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPT2_SCHPO1.102e-4349.10GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RABD1_ARATH3.207e-4348.63Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
YPT1_YEAST4.189e-4346.56GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB8B_BOVIN4.189e-4348.26Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
YPTC1_CHLRE5.471e-4351.20GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB43_RAT7.146e-4351.46Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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