CK932640

Overview
NameCK932640
Unique NameCK932640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.332e-43
Identity = 88/171 (51.46%), Postives = 119/171 (69.59%), Query Frame = 3
Query:  150 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 659
            ++D   D+LFK+VL+GD++VGK+ ++ RF    F     STIGV+F  + ++I GK VK QIWDTAGQERFR +T +YYR A GA+L YDIS+R TF S+  W+ ++  ++  N+V +L+GNKSDL D REV  AE ++LAE    L  +ETSA DSSNV  AF  V TE+
Sbjct:    8 DQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.592e-42
Identity = 84/157 (53.50%), Postives = 112/157 (71.34%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 638
            +Y+FK ++IGD  VGKS LL +F  ++F P+S  TIGVEF T+ +D+N K++K QIWDTAGQERFRAVT +YYRGA GALLVYDI+RR T++ +  WL +    ++ N V +L+GNK DL+  R+VT  E  A A+  GL F+E+SA    NV  AF
Sbjct:    6 EYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAF 162          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.715e-42
Identity = 84/164 (51.22%), Postives = 119/164 (72.56%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++ +GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F+++ +WLNE+  ++  NV  +LVGNKSDL   + V T   KA A+  G+ FMETSA +++NV  AF  +   I
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.546e-42
Identity = 90/192 (46.88%), Postives = 128/192 (66.67%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVV 743
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNKSDL   + V     K  A+  G+ F+ETSA +++NV  AF T+  EI N   R   I+     K S   N  T V
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKN---RMGPITAASDSKPSVKINSSTPV 197          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.632e-42
Identity = 81/172 (47.09%), Postives = 122/172 (70.93%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G + VYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+ + R+V+   G+ LA   G+ F+ETSA  S NV  AF T+  +I   L++K+
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKM 177          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.900e-42
Identity = 84/166 (50.60%), Postives = 121/166 (72.89%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 665
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNKSDL   + V     KA A+  G+ F+ETSA +++NV  AF T+  EI N
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKN 171          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.900e-42
Identity = 83/164 (50.61%), Postives = 122/164 (74.39%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL+E+  ++  NV  +LVGNKSDL   R V+T   K  AE+ G+ F+ETSA +++NV  AF  +  +I
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.900e-42
Identity = 80/171 (46.78%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  147 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 659
            + +  A DYL K++LIGDS VGKS LL RF+ D F P+  +TIG++F+ + +++ GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++  ++F +I  W+  +  H+  +V  +L+GNK D+ + + V ++ GK+LA+  G+ F+ETSA +S NV  AF ++  +I
Sbjct:    6 TNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDI 176          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.900e-42
Identity = 81/172 (47.09%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  168 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 683
            DYLFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+ D R+V+   G+ LA   G+ FMETSA  + NV  AF T+  +I   + +K+
Sbjct:    6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKL 177          
BLAST of CK932640 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.032e-41
Identity = 87/168 (51.79%), Postives = 120/168 (71.43%), Query Frame = 3
Query:  171 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 674
            YLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + +++NGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ + TF+++ +WL E+   +  NV  +LVGNKSDL   + V     KA A++  + F+ETSA  S+NV  AF T+ TEI N L+
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLT 174          
The following BLAST results are available for this feature:
BLAST of CK932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB43_MOUSE9.332e-4351.46Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB14_DICDI1.592e-4253.50Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
YPTM2_MAIZE2.715e-4251.22GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB1A_LYMST3.546e-4246.88Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB8_DISOM4.632e-4247.09Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
YPTV1_VOLCA7.900e-4250.60GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPT1_PHYIN7.900e-4250.61Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB8A_DICDI7.900e-4246.78Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8A_BOVIN7.900e-4247.09Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB1A_DICDI1.032e-4151.79Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932640 ID=CK932640; Name=CK932640; organism=Citrus sinensis; type=EST; length=883bp
GGGGTTACTGGTTTTGATTGTACCACTCAATACTACATTCAGAAGAAAGT
TGGTCCCTGAAAAGATCTACAACCCAGAAGTCTATTTGTTTGCCCATATG
GATCAATAGTGTAAGAATTCTGTGAAAGTAGAAAATGGCTTTTTATTCTG
AGGAGGACAGAGCTGAGGATTATCTTTTCAAGGTTGTTCTAATTGGTGAT
TCAGCTGTTGGGAAATCAAATTTGCTCGCTAGATTTGCAAGAGATGAGTT
CTACCCGAATTCAAAATCGACCATCGGAGTGGAATTCCAAACCCAAAAGA
TGGATATCAATGGAAAGGAGGTTAAGGCACAGATCTGGGACACAGCAGGT
CAGGAACGGTTCAGGGCTGTTACATCTGCGTACTACAGGGGTGCAGTTGG
AGCTCTCTTGGTCTATGACATTAGTAGACGACAGACATTTGATAGCATTG
GCAGATGGCTTAATGAACTTCACACTCACTCAGATATGAATGTAGTAACC
ATACTTGTGGGCAACAAGTCGGATCTCAAAGACGCGAGGGAGGTAACTAC
TGCAGAAGGCAAGGCCTTGGCAGAGGCACAGGGTTTATTTTTCATGGAGA
CTTCAGCTCTTGATTCCTCAAATGTAACTGCTGCCTTTCAGACTGTCGTC
ACAGAGATTTACAATATACTAAGCCGGAAAGTTATGATATCTCAAGAGCT
GAAGCAAAAGGATTCTTCCTCATTCAACGGGAAGACAGTAGTTTTAGAAG
GAGAAAAGAAGGAAGCAGATGCCGAGCCAAAAAAAGCTGGGTGTTGTTCA
TCTTAAAGATGTGATGCTTGCTCAAGCTCAACATCTGATCTGTGTGCTGC
TGAAATACTCTTAGCTCAGACATGCCACTGAAA
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