CK932641
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16 Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 2 Query: 53 VPISSFL----LMASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 VP++S L LM++ + F+GGL+ T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE + AI M+G+ L+GR+I VN A Sbjct: 21 VPVTSMLGSLRLMST-----KLFIGGLSWG--TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14 Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 2 Query: 83 SADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337 S D R +VG L+ D +L E FS G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 202 SVDSSNRVYVGNLSWG--VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14 Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 2 Query: 95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 E + FVGGL TT+ SL + FS YG + E ++ DRE+ RSRGFGFVTF + + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLNFE--TTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14 Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 2 Query: 83 SADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337 S D R +VG L+ D +L E FS G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 203 SVDSSNRVYVGNLSWG--VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 A E + FVGGL+ T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 A E + FVGGL+ T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.076e-14 Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 98 FRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337 +R +VG + D+ L + FS +G ++ ++++ DRETGRSRGFGFVT E M DAI ++GQ+LDGR I VN A+ Sbjct: 230 YRIYVGNIPWG--IDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13 Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 A E + FVGGL+ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFD--TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 E + FVGGL+ T + L FS YG I E ++ DRET RSRGFGFVTF + + +DA+ GMNG+ +DGR I V++A Sbjct: 5 EGKLFVGGLSFD--TDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13 Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 A E + FVGGL+ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFD--TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of CK932641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932641 ID=CK932641; Name=CK932641; organism=Citrus sinensis; type=EST; length=747bpback to top |