CK932641

Overview
NameCK932641
Unique NameCK932641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 2
Query:   53 VPISSFL----LMASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            VP++S L    LM++     + F+GGL+    T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   21 VPVTSMLGSLRLMST-----KLFIGGLSWG--TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            S D   R +VG L+      D +L E FS  G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  202 SVDSSNRVYVGNLSWG--VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:   95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            E + FVGGL     TT+ SL + FS YG + E  ++ DRE+ RSRGFGFVTF + +  +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLNFE--TTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            S D   R +VG L+      D +L E FS  G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  203 SVDSSNRVYVGNLSWG--VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            A  E + FVGGL+    T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            A  E + FVGGL+    T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.076e-14
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   98 FRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            +R +VG +       D+ L + FS +G ++ ++++ DRETGRSRGFGFVT   E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  230 YRIYVGNIPWG--IDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            A  E + FVGGL+    T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFD--TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            E + FVGGL+    T +  L   FS YG I E  ++ DRET RSRGFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFD--TDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            A  E + FVGGL+    T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFD--TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of CK932641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRP2_ARATH4.353e-1647.96Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_NICSY3.119e-1444.7129 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
CIRBP_XENTR3.119e-1448.75Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
ROC2_NICPL5.321e-1444.7131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
CIRBP_PONAB5.321e-1449.40Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN5.321e-1449.40Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC4_NICSY9.076e-1446.2531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
CIRBP_RAT1.185e-1348.19Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA1.185e-1350.00Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE1.185e-1348.19Cold-inducible RNA-binding protein OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932641 ID=CK932641; Name=CK932641; organism=Citrus sinensis; type=EST; length=747bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCCAGGCCAGGGCCACCACTGACAGCTC
TCTCCATGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTA
TTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTC
CGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAA
TCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCG
GTGGCGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGA
GGTGGTGGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCG
CGGATACGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTT
ACAGCCGTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGG
AGCGGTGCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATA
AATTAGGAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTT
ATGATGTGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTC
CCTGTTTGGTTAATTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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