CK932641

Overview
NameCK932641
Unique NameCK932641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            A  E + FVGGL+    T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFD--TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   53 VPISSFLLMASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            VP+SS +L +   +  + ++GGL+    T + SL +AFS++  + E++++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   17 VPVSS-MLGSLRYMSTKLYIGGLSPG--TDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   98 FRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            FR +VG L       +  L + FS +G ++E++++ DRETGRSRGFGFVT  D   + +AI  ++GQNL+GR I VN A+
Sbjct:  244 FRVYVGNLPWD--VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            E + F+GGL     T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFD--TNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  101 RCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            R +VG L     T  S L + FS +G ++ +++++DRETGRSRGFGFVT   E  + DAI  ++GQ LDGR + VN A+
Sbjct:  150 RVYVGNLPWDVDT--SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            E + F+GGL     T +  L +AF+ YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFE--TNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            E + FVGGL     T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFN--TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   98 FRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            +R +VG +       D+ L + FS +G ++ ++++ DRE+GRSRGFGFVT   E  M +AI  ++GQ LDGR I VN A+
Sbjct:  191 YRIYVGNIPWD--IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            E + FVGGL     T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFN--TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            M  AD   + F+GGL     T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTE--TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
The following BLAST results are available for this feature:
BLAST of CK932641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CIRBP_CRIGR1.185e-1348.19Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
RT19_ARATH2.641e-1342.1140S ribosomal protein S19, mitochondrial OS=Arabid... [more]
ROC3_ARATH2.641e-1346.2531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBB_XENLA2.641e-1348.75Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
ROC1_SPIOL5.883e-1346.8428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
CIRBA_XENLA5.883e-1347.50Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
RBM3_MOUSE1.003e-1247.50Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
ROC3_NICSY1.311e-1243.7528 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM3_RAT2.920e-1246.25Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
HNRPG_PANTR6.504e-1243.02Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932641 ID=CK932641; Name=CK932641; organism=Citrus sinensis; type=EST; length=747bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCCAGGCCAGGGCCACCACTGACAGCTC
TCTCCATGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTA
TTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTC
CGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAA
TCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCG
GTGGCGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGA
GGTGGTGGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCG
CGGATACGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTT
ACAGCCGTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGG
AGCGGTGCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATA
AATTAGGAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTT
ATGATGTGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTC
CCTGTTTGGTTAATTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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