CK932641
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13 Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 86 ADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 A E + FVGGL+ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFD--TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13 Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 2 Query: 53 VPISSFLLMASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337 VP+SS +L + + + ++GGL+ T + SL +AFS++ + E++++ ++ TGRSRG+GFV F E S AI MNGQ L+G NI+VN A+ Sbjct: 17 VPVSS-MLGSLRYMSTKLYIGGLSPG--TDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13 Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 98 FRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337 FR +VG L + L + FS +G ++E++++ DRETGRSRGFGFVT D + +AI ++GQNL+GR I VN A+ Sbjct: 244 FRVYVGNLPWD--VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13 Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 2 Query: 95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 E + F+GGL T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+ +DGR I V++A Sbjct: 4 EGKLFIGGLNFD--TNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13 Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 101 RCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337 R +VG L T S L + FS +G ++ +++++DRETGRSRGFGFVT E + DAI ++GQ LDGR + VN A+ Sbjct: 150 RVYVGNLPWDVDT--SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13 Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 E + F+GGL T + L +AF+ YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 4 EGKLFIGGLNFE--TNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12 Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2 Query: 95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 E + FVGGL T + +L + FS++G I E ++ DRET RSRGFGF+TF + + DA+ MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFN--TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12 Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2 Query: 98 FRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337 +R +VG + D+ L + FS +G ++ ++++ DRE+GRSRGFGFVT E M +AI ++GQ LDGR I VN A+ Sbjct: 191 YRIYVGNIPWD--IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12 Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 2 Query: 95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 E + FVGGL T + +L + FS++G I E ++ DRET RSRGFGF+TF + + D + MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFN--TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 2 Query: 77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334 M AD + F+GGL T + +L F YG I+E ++ DRET +SRGF FVTF +DA MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTE--TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84 The following BLAST results are available for this feature:
BLAST of CK932641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932641 ID=CK932641; Name=CK932641; organism=Citrus sinensis; type=EST; length=747bpback to top |