CK932641

Overview
NameCK932641
Unique NameCK932641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            M  AD   + F+GGL     T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTE--TNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 33/79 (41.77%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  101 RCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            R +VG L+      D +L   FS  G ++E+++I DR++GRS+GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWG--VDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   95 EFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            E + FVGGL     T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFN--TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  101 RCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            R +VG L+      D +L   F+  G ++E+++I DR++GRS+GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWG--VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            M  AD   + F+GGL     T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTE--TNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            M  AD   + F+GGL     T + +L   F  YG I+E  ++ DRET +SRGF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTE--TNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 334
            M  AD   + F+GGL     T + SL   F  YG I E  ++ DRET +SRGF F+TF      + A+  MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLE--TDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            S D   R +VG LA        +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWG--VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CK932641 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAQARATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 337
            S D   R +VG LA        +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWG--VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
The following BLAST results are available for this feature:
BLAST of CK932641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HNRPG_HUMAN6.504e-1243.02Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
ROC1_ARATH8.495e-1241.77Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM3_HUMAN1.109e-1146.25Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
ROC2_ARATH1.892e-1141.7729 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
HNRPG_RAT1.892e-1141.86Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_MOUSE4.216e-1141.86Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRPG_BOVIN7.191e-1141.86Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
ROC1_NICSY9.392e-1140.0029 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL9.392e-1140.0030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_D03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932641 ID=CK932641; Name=CK932641; organism=Citrus sinensis; type=EST; length=747bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCCAGGCCAGGGCCACCACTGACAGCTC
TCTCCATGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTA
TTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTC
CGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAA
TCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCG
GTGGCGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGA
GGTGGTGGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCG
CGGATACGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTT
ACAGCCGTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGG
AGCGGTGCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATA
AATTAGGAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTT
ATGATGTGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTC
CCTGTTTGGTTAATTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top