CK932645

Overview
NameCK932645
Unique NameCK932645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1463 contig Csv1_Contig1463:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL1_BOVIN (Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.375e-19
Identity = 67/244 (27.46%), Postives = 118/244 (48.36%), Query Frame = 2
Query:  149 SLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 841
            S+P I + +    VAV  V               +    +FQ+WR IT  F+     GT  + + + L  + +Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ +L+G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   10 SIPTITRYWFAATVAVPLVGKLGLISPAYFFLWPEAFLYRFQIWRPITATFYFPVGPGTGFL-YLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL1_PONAB (Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.102e-19
Identity = 67/244 (27.46%), Postives = 117/244 (47.95%), Query Frame = 2
Query:  149 SLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 841
            S+P I + +    VAV  V               +    +FQ+WR IT  F+     GT  + + + L  +  Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ +L+G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   10 SIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPGTGFL-YLVNLYFLYHYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL1_MOUSE (Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 65/244 (26.64%), Postives = 117/244 (47.95%), Query Frame = 2
Query:  149 SLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 841
            S+P I + +    VAV  +               +    +FQ+WR  T  F+     GT  + + + L  + +Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ +L+G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   10 SIPAITRYWFAATVAVPLIGKLGIISPAYFFLWPEAFLYRFQIWRPFTATFYFPVGPGTGFL-YLVNLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14
Identity = 49/172 (28.49%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  245 EYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIA----RYGVNLEKGPFERRTADFLWMMIFGALSLLVLS-AIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 745
            ++ LV +KFQ WR +T   +    +   G   LM+      Y   LE   +  R+AD+L+M+IF       L  A+ I   YFL   +V  ++YVW +   ++ ++ +  +   A YLPW +   + +       +L+GI+ GH Y+F+ + +P   G +L+ TP+++ +L+
Sbjct:   41 QWDLVVNKFQFWRPLTALIYYPV-TPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDI---YFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPDEYGVDLISTPEFLHRLI 208          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: YFFH_SCHPO (Uncharacterized derlin-like protein C1687.17c OS=Schizosaccharomyces pombe GN=SPAC1687.17c PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 2
Query:  278 WRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLV---LSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS--PLVPDLLGIIAGHLYYFLT 679
            WR IT F ++G F +   + L  + R+   LE+     +T  FL  ++    SLLV    S +P   SYF      F ++Y+WS + P  +I+I GL  +KA Y+PW M+ L  +     PL+ DL+  + GH+Y+F+T
Sbjct:   31 WRAITTFLYVGPFGLELILYLSFLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFS-----FTMLYIWSWKHPLYRISILGLFDVKAPYVPWVMVLLRWLRTGIFPLL-DLISALIGHVYFFVT 163          
BLAST of CK932645 vs. ExPASy Swiss-Prot
Match: DFM1_YEAST (DER1-like family member protein 1 OS=Saccharomyces cerevisiae GN=DFM1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 51/186 (27.42%), Postives = 82/186 (44.09%), Query Frame = 2
Query:  149 SLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPF-----ERR----TADFLWMMIFGALSLLVLSAIPIFRSYF---LGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFG-SPLVPDLLGIIAGHLY 667
            ++PPI +   TL + +  V              + L F K Q+WRL+T+   L + ++   + L  I      LE+G F      RR    T D+ + + F  L++   + I I+ SY+   L    +  + Y WS +  N QI  YGL+ +   Y P   L +  +F     V  L+G   G+LY
Sbjct:   29 NIPPITRTLFTLAIVMTIVGRLNLINPWYFIYVWNLTFKKVQIWRLLTSCVMLSSRAMPALMELYSIYDRSSQLERGHFGPGLSNRRGPMVTVDYAYYLCFCILAITTATTI-IYGSYYPVVLTSGFISCITYTWSIDNANVQIMFYGLIPVWGKYFPLIQLFISFVFNEGDFVISLIGFTTGYLY 213          
The following BLAST results are available for this feature:
BLAST of CK932645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DERL1_BOVIN2.375e-1927.46Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1[more]
DERL1_PONAB3.102e-1927.46Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1[more]
DERL1_MOUSE1.179e-1826.64Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1[more]
DERL1_CAEEL6.694e-1428.49Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 S... [more]
YFFH_SCHPO4.339e-1334.53Uncharacterized derlin-like protein C1687.17c OS=S... [more]
DFM1_YEAST5.304e-1127.42DER1-like family member protein 1 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_D07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932645 ID=CK932645; Name=CK932645; organism=Citrus sinensis; type=EST; length=861bp
GGGGGACCANNNGTTTTTAAATTTTCCGCTGCTTATTGTCTCTTCGGAGC
ATACTATCAACAAGGGGAAAACGAAGATCTAAAGCTGCGCGTTTCGCTTG
AATTAGCCATCTGAGTCCGCAATGTCTTCACCTGCTGAATACTATCACTC
TCTTCCACCCATATGCAAGGCTTATGGGACCTTGTGTGTTGCGGTCGCTA
CAGTTTGTTCGTTAGGATTATTGGATCTTTCTATTCTTGCATTAGAATAC
AAGCTCGTGTTTTCAAAATTTCAGGTATGGAGGTTGATAACAAATTTCTT
TTTCCTTGGAACTTTTTCAATCAATTTTGGGATTCGCCTTTTGATGATAG
CGAGATATGGAGTTAACCTGGAGAAGGGACCATTTGAAAGGCGTACAGCA
GATTTTTTATGGATGATGATTTTTGGAGCCTTATCTCTGTTGGTGTTGTC
AGCCATCCCCATATTTCGATCTTATTTCCTAGGGATATCACTTGTTTTTA
TGCTTGTCTATGTCTGGAGTAGAGAATTCCCAAATTCTCAGATCAATATA
TATGGCCTCGTGACACTTAAGGCATTTTATCTACCATGGGCTATGCTTGC
TTTGGACGTCATTTTTGGTTCACCCCTTGTACCAGACCTGCTGGGAATCA
TAGCAGGACATCTGTATTACTTTTTGACTGTCTTACATCCACTTGCAACT
GGAAAGAACTTGTTGAAGACTCCAAAATGGGTACAAAAACTGGTGGCGAG
GTGGAGAATCGGAGCTCCAGCTATCAATCGTGCCCAGCCTGAAAGGACAA
CTGGTGTGGCTTTCAGAGGAAGATCATATCGTTTAAGCGATTGATTTATA
TATGGCAACGT
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