CK932650

Overview
NameCK932650
Unique NameCK932650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 329.331 bits (843), Expect = 1.408e-89
Identity = 156/221 (70.59%), Postives = 182/221 (82.35%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 328.946 bits (842), Expect = 1.839e-89
Identity = 154/221 (69.68%), Postives = 182/221 (82.35%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFMDVVSI KT ENFRL+YD KGRF +H I +EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DL+T KIT+FIKF+ GN+ MVTGG N GR+G+I NREKH GSF+ +H++D+ G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 9.128e-89
Identity = 154/221 (69.68%), Postives = 182/221 (82.35%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK NDT++++LET KIT+FIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 9.128e-89
Identity = 155/221 (70.14%), Postives = 180/221 (81.45%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.557e-88
Identity = 154/221 (69.68%), Postives = 182/221 (82.35%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +PY+ T+DGRTIRYPDPLIK ND+I+LD+ T KI +FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATR
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.530e-88
Identity = 152/221 (68.78%), Postives = 183/221 (82.81%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +P++ T+DGRTIRYPDPLIK ND+++LD+ T+KI +FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATR
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.727e-88
Identity = 154/221 (69.68%), Postives = 180/221 (81.45%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKRLNAPK WMLDKLGG FAP+PS+GPHK RE LPLI++LRNRLKYALT  EV  I+ QR + VD KVRTD  YPAGFMDVV+I KT E FRLLYD KGRF LH I  EEAK+KLC+V+ VQ G KG+P++ T+D RTIRYPDPLIK NDT+K+DL T KI ++IKFD GNV MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATR
Sbjct:    1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLIKVDGKVRTDTNYPAGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.318e-87
Identity = 156/221 (70.59%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DA   EFATR
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.318e-87
Identity = 156/221 (70.59%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DA   EFATR
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 1.318e-87
Identity = 156/221 (70.59%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DA   EFATR
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATR 221          
The following BLAST results are available for this feature:
BLAST of CK932650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_XENTR1.408e-8970.5940S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4X_DANRE1.839e-8969.6840S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MONDO9.128e-8969.6840S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO9.128e-8970.1440S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_BOMMO1.557e-8869.6840S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_SPOFR4.530e-8868.7840S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_IXOSC7.727e-8869.6840S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4C_SCHPO1.318e-8770.5940S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4B_SCHPO1.318e-8770.5940S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4A_SCHPO1.318e-8770.5940S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_C06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932650 ID=CK932650; Name=CK932650; organism=Citrus sinensis; type=EST; length=774bp
GGGGGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTCACTTCGTTT
TTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCA
CGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAAT
GCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAA
GCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTA
TCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCA
ATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGTACAGATAA
GACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATG
AGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCA
ATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCA
ATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTA
TTCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGAC
CTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGT
TGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGA
ACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCACATCCAGGATGCT
NNNGGTCATGAGTTTGCAACTCGT
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