CK932650

Overview
NameCK932650
Unique NameCK932650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 322.398 bits (825), Expect = 1.721e-87
Identity = 152/221 (68.78%), Postives = 179/221 (81.00%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL + KIT FIKFD GNV MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 320.087 bits (819), Expect = 8.543e-87
Identity = 152/221 (68.78%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV MV GG N GRVG++ NRE+H GS + +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.903e-86
Identity = 151/221 (68.33%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.903e-86
Identity = 151/221 (68.33%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.903e-86
Identity = 151/221 (68.33%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.903e-86
Identity = 151/221 (68.33%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.486e-86
Identity = 152/221 (68.78%), Postives = 177/221 (80.09%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +  I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KI  FIKFD GNV MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.246e-86
Identity = 151/221 (68.33%), Postives = 179/221 (81.00%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VD KVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL T KIT F+KF+ GN+VM TGGRN GRVG I +RE+H+G F+ +HI+DA  ++F TR
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.240e-86
Identity = 150/221 (67.87%), Postives = 179/221 (81.00%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV  I MQR + VD KVRTD  YP GFMDVV+I KT E FRL+YD KGRF +H I +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++ TNKI + IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATR 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 7.232e-86
Identity = 149/221 (67.42%), Postives = 179/221 (81.00%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL  REV AILMQRHV VD KVRTD TYPAGFMDV+++  TNENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL + KIT+FIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+  + F TR
Sbjct:    1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTR 221          
The following BLAST results are available for this feature:
BLAST of CK932650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4Y1_MACFU1.721e-8768.7840S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y2_PANTR8.543e-8768.7840S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4Y1_PANTR1.903e-8668.3340S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA1.903e-8668.3340S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN1.903e-8668.3340S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO1.903e-8668.3340S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4Y1_PONPY2.486e-8668.7840S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_YARLI3.246e-8668.3340S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_LYSTE4.240e-8667.8740S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_YEAST7.232e-8667.4240S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_C06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932650 ID=CK932650; Name=CK932650; organism=Citrus sinensis; type=EST; length=774bp
GGGGGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTCACTTCGTTT
TTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCA
CGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAAT
GCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAA
GCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTA
TCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCA
ATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGTACAGATAA
GACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATG
AGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCA
ATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCA
ATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTA
TTCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGAC
CTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGT
TGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGA
ACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCACATCCAGGATGCT
NNNGGTCATGAGTTTGCAACTCGT
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