CK932650
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33 Identity = 83/226 (36.73%), Postives = 123/226 (54.42%), Query Frame = 1 Query: 118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771 +G K+HLKRL AP W L + F +P G H E LPL+LI+R+ LKYA RE I+ VLVD +VR ++ P G MDVVS+P NEN+R+L+D KGR +L E KLCK+++ + G +N +DGR I+ DP + K DT+ + + +I I F+VG + +TGG++ G I E+ + + +++ G +F T Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKT 227
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33 Identity = 86/230 (37.39%), Postives = 128/230 (55.65%), Query Frame = 1 Query: 112 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDAXGHEFAT 771 MAR G ++ LK L AP+ W + + +A KP GPH + + LPL+LI+RN L YA T RE ++ + H VD VR D +P GFMDV+ + T E FR+L F+LH I +EE K ++ + + G +N +DGR I R DP + + DT+ + + +I IKF G + ++ GGRN GRVG++K+ +K G T + ++DA G+ F T Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQT 230
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32 Identity = 83/230 (36.09%), Postives = 125/230 (54.35%), Query Frame = 1 Query: 112 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771 MAR G ++HLK L APK W + + G F KPS GPH +PL++++R+ L YA T RE ++ + H +D +VR + YP GFMDV+ I T E +R+L F LH I EEA+FKL ++ + G ++ +DGR IR DP K T+K+ + ++ + +VG++V++ GGRN GRVG I + + + I+DA G + T Sbjct: 1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQT 230
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.604e-32 Identity = 77/226 (34.07%), Postives = 119/226 (52.65%), Query Frame = 1 Query: 118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771 +G +KHLKRL APK+W + + + +PS+GPH LPL+L+LR+ L YA RE ++ VLVD R D YP G MDV+S+P NE+F ++ D KGR +L+ I+D KLCK+ + + G +N +DGR + + + K D + L + I ++F G + +TGG++ G I EK + + I ++ G +F T Sbjct: 4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKT 227
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32 Identity = 82/223 (36.77%), Postives = 127/223 (56.95%), Query Frame = 1 Query: 118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDAXGHEFAT 771 +G K+HLKRL AP W + + +A +PS GPH + +PLI I+R+ L YA T RE IL + +LVD +VR D +P G MDVVSIP+T E++R+L + G+ LH I +EEAK K ++ + + + +N +DG ++ D K + T+ + + +I + + F+VG V VT G+N R G I++ R+ G + + I+D G F T Sbjct: 4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIEDENGELFDT 225
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.854e-32 Identity = 77/192 (40.10%), Postives = 109/192 (56.77%), Query Frame = 1 Query: 121 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 696 G +KHLKR APK W + K + K S+GPH E +PL+++LR+ L A RE IL VLVD R + +P GFMDV+SIPK N+ FR+L D KGR L I ++++ FKL K+ + G +N GR I D K D + L++ KI++ IKF+ G + ++TGG++ VG I Sbjct: 5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.340e-31 Identity = 86/233 (36.91%), Postives = 127/233 (54.51%), Query Frame = 1 Query: 112 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDAXGHEFAT 771 MAR G KKHLK L APK W + + +A KPS GPH C PL++I+R+ L YA T RE ++ + H VD +VR + YP G MDV+ I T E +R++ L I EEAK+KL ++ + + G +N +DGR I+ DP + K T+++ + +I +I D G +V+++GGRN GRVG I K +H+ + I+D G++F T Sbjct: 1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQT 230
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.091e-31 Identity = 81/224 (36.16%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDAXGHEFAT 771 +G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE IL + LVD KVR D +P G MDVVSIP+T E++R+L + G+ LH I +EEA K ++R+ + + +N +DG + PL + ++ T+ + + +I E + F+ G V VT G+N R G I++ ++ G + + I+D G F T Sbjct: 4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDT 225
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.526e-30 Identity = 80/224 (35.71%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDAXGHEFAT 771 +G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE IL + LVD +VR D +P G MDVVSIP+T E++R+L + G+ LH I +EEA K ++R+ + + +N +DG + PL + ++ T+ + + +I E + F+ G V VT G+N R G I++ ++ G + + I+D G F T Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDT 225
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.628e-30 Identity = 72/226 (31.86%), Postives = 120/226 (53.10%), Query Frame = 1 Query: 118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771 +G +KHLKRL AP +W L + F +PS GPH + LPL+LI+R+ LK A RE I+ +L+D R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K D++ + L + ++F+ G + +TGG++ G + EK + + +++ G +F T Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKT 227 The following BLAST results are available for this feature:
BLAST of CK932650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932650 ID=CK932650; Name=CK932650; organism=Citrus sinensis; type=EST; length=774bpback to top |