CK932650

Overview
NameCK932650
Unique NameCK932650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 83/226 (36.73%), Postives = 123/226 (54.42%), Query Frame = 1
Query:  118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+LI+R+ LKYA   RE   I+    VLVD +VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + +   +I   I F+VG +  +TGG++ G    I   E+     + + +++  G +F T
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKT 227          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 86/230 (37.39%), Postives = 128/230 (55.65%), Query Frame = 1
Query:  112 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDAXGHEFAT 771
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+LI+RN L YA T RE   ++ + H  VD  VR D  +P GFMDV+ +  T E FR+L      F+LH I +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G + ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQT 230          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 83/230 (36.09%), Postives = 125/230 (54.35%), Query Frame = 1
Query:  112 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +D +VR +  YP GFMDV+ I  T E +R+L      F LH I  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ +   ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQT 230          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.604e-32
Identity = 77/226 (34.07%), Postives = 119/226 (52.65%), Query Frame = 1
Query:  118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+L+LR+ L YA   RE   ++    VLVD   R D  YP G MDV+S+P  NE+F ++ D KGR +L+ I+D     KLCK+ +    + G   +N +DGR          +  + + K  D + L +    I   ++F  G +  +TGG++ G    I   EK +   + I ++   G +F T
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKT 227          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32
Identity = 82/223 (36.77%), Postives = 127/223 (56.95%), Query Frame = 1
Query:  118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDAXGHEFAT 771
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEAK K  ++ + +  +     +N +DG     ++   D   K + T+ + +   +I + + F+VG  V VT G+N  R G I++ R+   G  + + I+D  G  F T
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIEDENGELFDT 225          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.854e-32
Identity = 77/192 (40.10%), Postives = 109/192 (56.77%), Query Frame = 1
Query:  121 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 696
            G +KHLKR  APK W + K    +  K S+GPH   E +PL+++LR+ L  A   RE   IL    VLVD   R +  +P GFMDV+SIPK N+ FR+L D KGR  L  I ++++ FKL K+      + G   +N   GR I   D   K  D + L++   KI++ IKF+ G + ++TGG++   VG I
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.340e-31
Identity = 86/233 (36.91%), Postives = 127/233 (54.51%), Query Frame = 1
Query:  112 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDAXGHEFAT 771
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++I+R+ L YA T RE   ++ + H  VD +VR +  YP G MDV+ I  T E +R++        L  I  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ +   +I  +I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQT 230          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.091e-31
Identity = 81/224 (36.16%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDAXGHEFAT 771
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD KVR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDT 225          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.526e-30
Identity = 80/224 (35.71%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDAXGHEFAT 771
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDT 225          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.628e-30
Identity = 72/226 (31.86%), Postives = 120/226 (53.10%), Query Frame = 1
Query:  118 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKT 227          
The following BLAST results are available for this feature:
BLAST of CK932650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METJA9.277e-3336.7330S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_AERPE9.277e-3337.3930S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_HYPBU2.699e-3236.0930S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_META34.604e-3234.0730S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_PYRKO6.013e-3236.7730S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_METST7.854e-3240.1030S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_STAMF1.340e-3136.9130S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_PYRHO5.091e-3136.1630S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_PYRAB2.526e-3035.7130S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METVS5.628e-3031.8630S ribosomal protein S4e OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_C06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932650 ID=CK932650; Name=CK932650; organism=Citrus sinensis; type=EST; length=774bp
GGGGGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTCACTTCGTTT
TTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCA
CGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAAT
GCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAA
GCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTA
TCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCA
ATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGTACAGATAA
GACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATG
AGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCA
ATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCA
ATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTA
TTCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGAC
CTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGT
TGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGA
ACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCACATCCAGGATGCT
NNNGGTCATGAGTTTGCAACTCGT
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