CK932650
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23 Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23 Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23 Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23 Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23 Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23 Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.290e-23 Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 690 HL++ AP W + K GG +A +PS+GPH LPL +++R+ L+YA T RE I+ + ++ VD VR D +P G MDVV I T E +R++ D + L I EA K +V G ++ +DGR + P + IK DT+ DLE I + +G + +VT G N G VG Sbjct: 3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.907e-23 Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 681 HL+R +P W + K GG +A +PS GPH +PL L++R+ L+YA T RE I+ + ++ VD VR + +P G MDVV I T E +R++ D + + L I EEA KL +V + G ++ +DGR + P IK D++ DL+ + I +G +VT G N G Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.641e-22 Identity = 64/221 (28.96%), Postives = 108/221 (48.87%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKN---REKHKGSFETIHIQDAXGHEFAT 771 H+ R AP L K + + + GPHK E +PL L+L++ L A T RE ++++ ++VD +VR D +P G MDV+SIP ++ FR++ D I E+AK+K ++ + + G +N DGR I P + + T+K+++ + I + + G ++ GGRN G G+IK + K + + I+ G T Sbjct: 3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQT 223
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.368e-22 Identity = 60/221 (27.15%), Postives = 108/221 (48.87%), Query Frame = 1 Query: 112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774 MA+G+KKH KR+++ K G F K SSGPH + + L+ I++ A +E ++ + V+ K +P MD +S P N+++R+L G+ ++ I E K+CKV + I T D R ++ IK D++ + ++I +KF+VG++ ++T G++ G + +IK K K + IH++ G + + Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKK 221 The following BLAST results are available for this feature:
BLAST of CK932650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932650 ID=CK932650; Name=CK932650; organism=Citrus sinensis; type=EST; length=774bpback to top |