CK932650

Overview
NameCK932650
Unique NameCK932650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDAXGHEFAT 771
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQT 221          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.290e-23
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 690
            HL++  AP  W +  K GG +A +PS+GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDVV I  T E +R++ D    + L  I   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G + +VT G N G VG
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.907e-23
Identity = 65/187 (34.76%), Postives = 98/187 (52.41%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 681
            HL+R  +P  W +  K GG +A +PS GPH     +PL L++R+ L+YA T RE   I+ + ++ VD  VR +  +P G MDVV I  T E +R++ D +  + L  I  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G N G
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.641e-22
Identity = 64/221 (28.96%), Postives = 108/221 (48.87%), Query Frame = 1
Query:  133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKN---REKHKGSFETIHIQDAXGHEFAT 771
            H+ R  AP    L K    +  + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VD +VR D  +P G MDV+SIP ++  FR++ D         I  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++ +  I +  +   G   ++ GGRN G  G+IK     +  K  +  + I+   G    T
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQT 223          
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.368e-22
Identity = 60/221 (27.15%), Postives = 108/221 (48.87%), Query Frame = 1
Query:  112 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAXGHEFATR 774
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ I++     A   +E   ++    + V+ K      +P   MD +S P  N+++R+L    G+  ++ I   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G++ G + +IK   K K   + IH++   G +   +
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKK 221          
The following BLAST results are available for this feature:
BLAST of CK932650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULIY1.343e-2330.5930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN1.343e-2330.5930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM1.343e-2330.5930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL1.343e-2330.5930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK1.343e-2330.5930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA1.343e-2330.5930S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_PYRCJ2.290e-2335.7930S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_THENV3.907e-2334.7630S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_SULTO5.641e-2228.9630S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4_BIGNA7.368e-2227.1540S ribosomal protein S4 OS=Bigelowiella natans GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_C06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932650 ID=CK932650; Name=CK932650; organism=Citrus sinensis; type=EST; length=774bp
GGGGGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTCACTTCGTTT
TTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCA
CGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAAT
GCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAA
GCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTA
TCTTACGTAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCA
ATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGTACAGATAA
GACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATG
AGAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCA
ATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCA
ATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTA
TTCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGAC
CTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGT
TGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGA
ACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCACATCCAGGATGCT
NNNGGTCATGAGTTTGCAACTCGT
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