CK932650
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.257e-21 Identity = 69/192 (35.94%), Postives = 94/192 (48.96%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 696 HL+R AP W + K GG + +PS GPH LPL LI+R+ LKYA T E I+ + +V VD VR D +P G MDV+ I T E +R++ D + L I EEA KL +V + G ++ +DGR T IK D++ DL I I +G +V G N G G + Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.144e-21 Identity = 68/194 (35.05%), Postives = 99/194 (51.03%), Query Frame = 1 Query: 124 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 699 +K+HL+ L P+ W + K G + KPS GPH +P+ + LR+ L A REV +L VLVD + D +P G DV++IP+ NE +R+L D +G+ L I EEA K K +R V I Y T DGRT D K + + ++ KI E I + + G++ GR+G+IK Sbjct: 5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIK 196
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.146e-21 Identity = 68/224 (30.36%), Postives = 106/224 (47.32%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN---RGRVGIIKNREKHKGSFETIHIQDAXGHEFAT 771 H+ R AP + K + + +GPHK +E +PL ++L+ LK T RE I+ VLVD KVR D YP G MDVV IP + R++ D +I E+AK+K ++ + + G+ +N DGR I +Y P + T+K++L KIT G M+ GGRN G++ I+ + + + + ++ G F T Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQT 223
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.146e-21 Identity = 65/218 (29.82%), Postives = 109/218 (50.00%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDL---ETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDAXGHEFAT 771 HLKR+ +PK W + + F K S GPH ++ LP+++ R+++ +E +L +R ++V+ + G D+VSIPK+ +++R+L D KGR I ++ A +L K+ + + G +N DG + D K+ D+I L L + N+I + F GN+ M+ GG++ G VG I GS I ++ G F T Sbjct: 4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFET 219
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19 Identity = 64/204 (31.37%), Postives = 95/204 (46.57%), Query Frame = 1 Query: 139 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQD 747 KRL + + + + P P+ G H + + L+ I+R+ LK + RE IL V VD K +K + GFMDV+ I E++R++Y+ +G L E A KL KVRS + T+DGRT D K D + + KI+E IK GN +T G + + G I E +G S +H Q+ Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQE 207
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19 Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 1 Query: 124 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDAXG 756 + H KRL+ PK W +++ F K +GPH +PL+++LR+ L+Y E + VLV+ D P G D+++ P +E +R+ D GR L I + A KL KV G +N +DG + + D++ +D +TN+I +++ G +V G++ G +G I GS T+ + D G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19 Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 1 Query: 124 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDAXG 756 + H KRL+ PK W +++ F K +GPH +PL+++LR+ L+Y E + VLV+ D P G D+++ P +E +R+ D GR L I + A KL KV G +N +DG + + D++ +D +TN+I +++ G +V G++ G +G I GS T+ + D G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.958e-19 Identity = 62/204 (30.39%), Postives = 96/204 (47.06%), Query Frame = 1 Query: 139 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNRE-KHKGSFETIHIQD 747 KRL P+ + + + P P G HK+ + L+ I+R+ L+ + RE IL V VD KV ++ + GFMDV+ I + E++R++Y+ +G L S + A K +V++ + +DGR + D I D + L KITE IK GN +TGG + G G I E K S +H + Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDE 207
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.699e-18 Identity = 63/221 (28.51%), Postives = 102/221 (46.15%), Query Frame = 1 Query: 133 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREK---HKGSFETIHIQDAXGHEFAT 771 H+ RL AP K + + S GPH + +PL L+LR+ L + + +E I+ VLVD +VR D YP G MDV++IP + R++ D + I +EE+KFKL ++ + + G+ N DGR + + T+K+ + +I F VM GG+N G +G +K + + + I+ G E+ T Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYET 223
BLAST of CK932650 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.784e-18 Identity = 59/216 (27.31%), Postives = 105/216 (48.61%), Query Frame = 1 Query: 124 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHI-QDAXGHE 762 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+ +D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K+ + G + +DG + D D+I +D E+ + +++ G +V G++ GR+G + + + GS T+ + D G+E Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGSGSNTVFVGDDEDGYE 215 The following BLAST results are available for this feature:
BLAST of CK932650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932650 ID=CK932650; Name=CK932650; organism=Citrus sinensis; type=EST; length=774bpback to top |