CK932652

Overview
NameCK932652
Unique NameCK932652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.239e-45
Identity = 95/227 (41.85%), Postives = 147/227 (64.76%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF+++N FY+G+YQ  IN +       P+  VERD  +YR+Y+A   Y +V+ EI  S+A  LQAV++ A YL+S   +++ ++ L   +S     +N T  L+A  I+ ++++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ  DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG+L +AL
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 243          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_DICDI (Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 87/235 (37.02%), Postives = 140/235 (59.57%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNSDLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAAT----PLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF  +N FYLG YQ+ IN  +  +   +      E D  +YR YIA G+Y LV+ E   +  +     +  ++LLA YLS PD N+E T+ ++ +W+SD  +  N  L++I   I+ +E+ Y+EAL+  N    +E  ++ +QIFLK+ R D A++    M++I D D T   L+ AW+N+  G  K++ A   F++ +E+Y  T L+LNG+AVC + M  F++AE LLL+++
Sbjct:    4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETKNNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFNEQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESI 238          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_CAEEL (Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21
Identity = 72/229 (31.44%), Postives = 125/229 (54.59%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESA-ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNE-ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF++RN F+LG+YQ+ I  +   ++   ++  E+D  +YRSYIA G   + + EI  +  +  L AV+  A + ++P  K+  ++ ++E ++   I S     L A I+  +E D ++ A +  +    +E  A  V I +KM++   A  +++ M QIDED TL+QLANA +       K+++A  I+ + S+KY  T  +   +AV  +   ++  AE LL  AL
Sbjct:    3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATIL--NEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQDYAAAEELLESAL 229          
The following BLAST results are available for this feature:
BLAST of CK932652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE_BOVIN1.239e-4541.85Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=... [more]
COPE_DICDI5.770e-3537.02Coatomer subunit epsilon OS=Dictyostelium discoide... [more]
COPE_CAEEL8.089e-2131.44Coatomer subunit epsilon OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_C08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932652 ID=CK932652; Name=CK932652; organism=Citrus sinensis; type=EST; length=773bp
GGGGGGAGTTGAAGAAGGGATCCAATCTAAATCAAAGAAGCAATCGATCA
AGAAGCGAAAAAGGAATAAAGAATGGCAGCGGCAGCAGCACCAGATCACT
TGTTCAATCTGAGAAACAACTTCTACTTGGGGGCGTATCAGGCCGCTATC
AACAACAGCGACCTCACCAATCTTCCACCAGACGACGCCGTTGAGCGTGA
CTGCCTCGTCTACCGCTCTTACATTGCCCTTGGCAGTTACCAGCTTGTGA
TCAGTGAGATCGATGAGTCGGCTGCTACACCTCTCCAAGCCGTGAAGTTG
CTTGCTCTCTATCTCTCTAGCCCTGACAACAAGGAATCAACAATTTCAAG
TTTAAAAGAGTGGTTGTCAGATCCAGCCATTGGGAGCAATGCGACATTAC
GCTTGATTGCTGGTATCATATTCATGCATGAAGAGGATTATAATGAGGCA
CTCAAACACACCAATGCTGGAGGGACCATGGAATTACATGCATTGAATGT
CCAAATATTCCTTAAGATGCACAGGTCTGACTATGCAGAGAGACAGCTGA
GGGCCATGCAACAGATTGATGAGGACCACACCCTAACTCAACTTGCAAAT
GCTTGGTTGAATTTGGCAGTGGGTGGTTCCAAGATACAGGAAGCATATCT
CATCTTTCAAGATTTCTCTGAGAAGTATCCAATGACAGGGTTGATCTTGA
ATGGAAAGGCTGTTTGCTGCATGCATATGGGGAACTTTGATGAAGCTGAA
GGATTGTTGCTTGATGCACTCAA
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