CK932656

Overview
NameCK932656
Unique NameCK932656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932656_ssr162 microsatellite CK932656_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1466 contig Csv1_Contig1466:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.195e-18
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRGQATD HSLAERARREKIS++MK LQD+VPGCNKV GKA +LDEII
Sbjct:  183 IHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEII 235          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            +HVRARRGQATD+HSLAERARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEII
Sbjct:  183 VHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEII 235          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            IHVRARRG+ATD HSLAERARREKIS++MK LQD+VPGCNKV GKA +LDEII
Sbjct:  139 IHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEII 191          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            +HVRA+RGQATDSHSLAER RREKI+ER+K LQDLVPGC K +G A++LD II
Sbjct:  102 VHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVII 154          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.687e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            +HVRARRGQATDSHS+AER RR KI+ER+K LQD+VPGC K +G A +LDEII
Sbjct:  145 VHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEII 197          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            +HVRARRGQATDSHSLAER RR KI+ER++ LQD+VPGC K +G A +LDEII
Sbjct:  143 VHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEII 195          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  715 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 837
            +HVRARRGQATDSHSLAERARREKI+ RMK+LQ+LVPGC+K
Sbjct:  202 VHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDK 242          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1
Query:  721 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP  NK   KA +LDEII
Sbjct:   99 VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKT-DKASMLDEII 148          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1
Query:  721 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP  NK   KA +LDEII
Sbjct:  130 VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKT-DKASMLDEII 179          
BLAST of CK932656 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1
Query:  721 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 873
            +RARRGQATD HS+AER RRE+I+ERMK LQ+LVP  NK   KA +LDEII
Sbjct:  138 IRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKT-DKASMLDEII 187          
The following BLAST results are available for this feature:
BLAST of CK932656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BH064_ARATH6.195e-1884.91Transcription factor bHLH64 OS=Arabidopsis thalian... [more]
BH048_ARATH1.380e-1781.13Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BEE2_ARATH1.380e-1783.02Transcription factor BEE 2 OS=Arabidopsis thaliana... [more]
BH075_ARATH7.572e-1675.47Transcription factor bHLH75 OS=Arabidopsis thalian... [more]
BEE3_ARATH1.687e-1573.58Transcription factor BEE 3 OS=Arabidopsis thaliana... [more]
BEE1_ARATH2.203e-1573.58Transcription factor BEE 1 OS=Arabidopsis thaliana... [more]
BH060_ARATH2.693e-1385.37Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BH082_ARATH2.521e-1172.55Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
BH069_ARATH4.300e-1172.55Transcription factor bHLH69 OS=Arabidopsis thalian... [more]
BH066_ARATH4.300e-1170.59Transcription factor bHLH66 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_B04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932656 ID=CK932656; Name=CK932656; organism=Citrus sinensis; type=EST; length=890bp
GGGGATCAGCAGTCTTACACAGTCACAGCTTTTTCTTTTCATCTCCATCT
GCATCAACTTCAACCTTTAAAAATCACAAATTAAAAGCCTTCACTCTCTA
TCTCTATCATCTGTCTCTATCTCCTAATCAACTTCTTAACTAACCCCATC
ATCTCAGTCAGTCACTCACTCACTCGCTCACAAACTCTCCAAAATCCAAA
CTTTCTCTCATCTACCAGGGGCCTCGAGTGCCTGGATCCGAATCCCAATC
CGCCTTTTTAATGTACCCACCCGGGTCACTAAAATGGATCCTCCGCTTGT
AAACGAGTCTTCCTTCTCTGCTGCCAACCCTTCATCCTACAGTTTGGCAG
AGATTTGGCCTTTTCCAATCAACAATGGCGGTGCCGGTGATGCCGGTCTT
CGAATGGGGAATATGGGTCATGGGTTCGGGGAAAGTTCGGCTCTCAGAGA
TGGGTCGATGGGGGAATCAACAGTGACTGAGCAGAGTGGTGGTGGGTGTG
GCAGAAAGAGAAGGGATTTGAGCTCTGAAGATGAATCTTCTAAGATTGTT
TCTACTACTAGTAGTGCCAATGACTTGAATGATTCAAATGGTAAATGGAT
GAAAACATCGGGATCAAAAATGAAAATGGTTCAAAAGCTGAAGTGGAAGC
AAGTTCTGCAGCTGGTAACAAGCCAGCTGAAAGTAGTAAACCCTCTGAGC
CACCTAAAGANNNNATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGAT
AGCCATAGTTTAGCAGAGAGAGCTAGACGAGAAAAAATTAGCGAGAGGAT
GAAGATTCTGCAGGATCTGGTCCCTGGATGCAATAAGGTTATTGGAAAAG
CTCTTGTTCTCGATGAAATAATAATTACATTCAGTCACTA
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