CK932658

Overview
NameCK932658
Unique NameCK932658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: DMPC_PSEUF (2-hydroxymuconic semialdehyde dehydrogenase OS=Pseudomonas sp. (strain CF600) GN=dmpC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 75/190 (39.47%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  243 NPATGEVIANVSCMGGKETKDAISSAFDAFNS-WSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDY--GAKFIEFYAEEAKRVYGEIIPATLPDRR---LFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPD 794
            NPA G+VIA V   G  E   A+ +A  A    W K++ +ER++ L +  D + A  +E  +   L+ GKP K     +D   GA   + +A+  K V  E      PD      + +++P GV G I+PWN PL ++T KVGPALACG TVVVKPSE TP             G+P GV NVV G  PD
Sbjct:   25 NPANGQVIARVHEAGRAEVDAAVQAARAALKGPWGKMSVSERAEILHRVADGITARFDEFLEAECLDTGKP-KSLASHIDIPRGAANFKVFADLLKNVATEAFEMATPDGSGAINYAVRRPKGVIGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPLTTALLGEVMQAAGVPAGVYNVVHGFGPD 213          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: BETB_XANC5 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 75/200 (37.50%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  213 YTPA---FSRQVHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVG-EVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLK-QPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPDI 797
            Y PA    + +V NPATGEV+ANV   G  +   A+ SA      W+ LT  ERS+ L +   LL    + L +L TL  GKPL E    +V  GA  +E+YA  A+ + G  +P  L +   F  + +P+GV GAI  WN+P+ +   K  PALA G  ++ KPSE TP             G+P GV NV+ G+   +
Sbjct:   15 YVPARGGHTFEVVNPATGEVLANVHNAGADDLDAAVDSAQAGQRQWAALTTVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDVVTGADVLEYYAGVAQALQGAQVP--LREGSFFYTRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASV 212          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: BETB_XANAC (Betaine aldehyde dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=betB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 76/200 (38.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  213 YTPA---FSRQVHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVG-EVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLK-QPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPDI 797
            Y PA    + +V NPATGEV+ANV   G  +   A+ SA      W+ LT  ERS+ L +   LL    + L QL TL  GKPL E    +V  GA  +E+YA  A+ + G  +P  L +   F  + +P+GV GAI  WN+P+ +   K  PALA G  ++ KPSE TP             G+P GV NV+ G+   +
Sbjct:   15 YVPARGGHTLEVVNPATGEVLANVHNAGVDDLDAAVDSAKAGQQRWAALTTVERSRILLRAVALLRERNDALAQLETLNTGKPLSETRSVDVVTGADVLEYYAGVAQALQGAQVP--LREGSFFYTRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASV 212          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: BETB_BURPP (Betaine aldehyde dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 67/182 (36.81%), Postives = 97/182 (53.30%), Query Frame = 3
Query:  243 NPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVG-EVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGN 785
            +PATGE +A+V      +   A+ SA      W+ LTA +RS+ LR+  DLL    +EL  L T + GKP+ E +  ++  GA  IE+YA  A  + G+ IP   P   ++  ++P+GV   I  WN+P+ +   K  PALA G  ++ KPSE TP             G+P GV NVV G+
Sbjct:   28 DPATGETLASVQQASAADVDRAVRSAKQGQREWAALTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGQQIPLR-PTSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEITPLSALKLAEIFTEAGVPAGVFNVVQGD 208          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 72/195 (36.92%), Postives = 108/195 (55.38%), Query Frame = 3
Query:  243 NPATGEVIANVSCMGGKETKDAISSAFDAFN-----SWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGA---KFIEFYAEEAKRVYG-EIIPATLPDRRL--FVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPD 794
            NP+T E+I ++     ++ + A+ +A  AF       W+ L +  R+K LR     +   K+   +L TL+ GKP  EAV ++D  A   ++ E++A +A+ +   +  P TLP  R    VL+QP+GV G I+PWN+PL M T K+ PALA GCT V+KPSE                G+PPGV+N++ G  PD
Sbjct:   29 NPSTEEIIGDIPAATAEDVEVAVVAARKAFKRNKGRDWAALWS-HRAKYLRAIAAKITEKKDHFVKLETLDSGKPRDEAVLDIDDVATCFEYFEYFAGQAEALDAKQKAPVTLPMERFKSHVLRQPIGVVGLISPWNYPLLMDTWKIAPALAAGCTTVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPD 222          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: AL8A1_HUMAN (Aldehyde dehydrogenase family 8 member A1 OS=Homo sapiens GN=ALDH8A1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 68/187 (36.36%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  240 HNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEA-VGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPDI 797
            ++P+TGEV   V   G  E + A+ +A +AF SWS  +  ERS+ L +  DLL    EE  Q  + +QGK L  A   ++    +   F+A  +     E           + ++ PVGVAG I+PWN PL ++T K+ PA+A G TV+ KPSE T              G+PPGVVN+V G  P +
Sbjct:   28 YDPSTGEVYCRVPNSGKDEIEAAVKAAREAFPSWSSRSPQERSRVLNQVADLLEQSLEEFAQAESKDQGKTLALARTMDIPRSVQNFRFFASSSLHHTSECTQMDHLGCMHYTVRAPVGVAGLISPWNLPLYLLTWKIAPAMAAGNTVIAKPSELTSVTAWMLCKLLDKAGVPPGVVNIVFGTGPRV 214          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: BETB_ACIAD (Betaine aldehyde dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.755e-26
Identity = 72/199 (36.18%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  213 YTPAFSRQVH---NPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKE-AVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPDI 797
            YT A S +     NPATGEVIA +      + + A+ SA +    W+  TA ERS+ LR+  D+L    +EL QL TL+ GK   E +  ++  GA  +E+YA  A  + GE +P        +  ++P+GV   I  WN+P+ +   K  PALA G  ++ KPSE TP             G+P GV NVV G   +I
Sbjct:   15 YTDATSGKTFDSINPATGEVIATIQQASQTDIEAAVKSAAEGQKVWAAKTAVERSRILRRAVDILRERNDELAQLETLDTGKAFSETSTVDIVTGADVLEYYAGLATAIQGEQVPLR-ESSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTAFKLAEIYSEAGLPAGVFNVVQGAGREI 212          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.755e-26
Identity = 72/189 (38.10%), Postives = 99/189 (52.38%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNS---WSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGA-KFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAP 791
            V+NPATGE I ++      +T  A+ +A  AF+    W ++ A+ER   L K  DL+   +  L  + +L  GKP  +A      G  K + +YA  A +++G  IP    D   F   +P+GV G I PWNFPL M   K+ PAL CG TVV+KP+E TP             G PPGVVN++ G  P
Sbjct:   57 VYNPATGEQICDIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGHLLDKLADLVERDRAILATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVD-GDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGFGP 244          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: IOLA_LISMF (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4b (strain F2365) GN=iolA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.822e-26
Identity = 70/182 (38.46%), Postives = 94/182 (51.65%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMG 782
            V NPATGEV+  V      E   A   A  AF  WS++    R++ L  +  LL+ HKE+L +LITLE GK L EA GEV  G + +EF A     + G+ + +   D      + PVGV G I P+NFP+ +       A+A G + ++KPSE TP             G+P GV NVV G
Sbjct:   26 VINPATGEVLCQVPISTRAELDQAAVIAEQAFEKWSQVAVPRRARVLFSFQQLLIQHKEKLARLITLENGKNLSEARGEVQRGIENVEFAAGAPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYG 207          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: IOLA_BACA2 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus amyloliquefaciens (strain FZB42) GN=iolA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.822e-26
Identity = 68/182 (37.36%), Postives = 97/182 (53.30%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMG 782
            V NPAT EV+  V     ++ + A+ SA +AF +WSK     R++ L  +  LL  +KEEL +LITLE GK   EA+GEV  G + +EF A     + G+ + +   D      + P+GV G I P+NFP+ +       A++ G T ++KPSE TP             G+P GV NVV G
Sbjct:   26 VINPATKEVMCQVPISTREDVEYAVRSASEAFQTWSKTAVPRRARILFNYQQLLQQNKEELARLITLENGKNTTEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAISLGNTFILKPSERTPLLTEKLAELFEQAGLPKGVFNVVHG 207          
The following BLAST results are available for this feature:
BLAST of CK932658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DMPC_PSEUF5.172e-2639.472-hydroxymuconic semialdehyde dehydrogenase OS=Pse... [more]
BETB_XANC55.172e-2637.50Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANAC5.172e-2638.00Betaine aldehyde dehydrogenase OS=Xanthomonas axon... [more]
BETB_BURPP5.172e-2636.81Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
BADH_ATRHO5.172e-2636.92Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
AL8A1_HUMAN5.172e-2636.36Aldehyde dehydrogenase family 8 member A1 OS=Homo ... [more]
BETB_ACIAD6.755e-2636.18Betaine aldehyde dehydrogenase OS=Acinetobacter sp... [more]
AL1A2_TAEGU6.755e-2638.10Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
IOLA_LISMF8.822e-2638.46Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACA28.822e-2637.36Methylmalonate semialdehyde dehydrogenase [acylati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_B06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932658 ID=CK932658; Name=CK932658; organism=Citrus sinensis; type=EST; length=797bp
GCGGGGGTATTTACAAACAAAAATCCTGCNNNTTTTGGGATCAAAGATCC
CAAATCGAATCTTTCATTTCAGTTCAGTTGTCATCACGCGAAACAGTAAT
AAAAGAGTAGTACACCAAACAAAGGACGAAGATGACGTTGAGTGGAGTGG
CACGTGTGGCATTTGTGGGCTCTCGCAGGATTTTCGCATCACATTTGCCA
AGCATGCAGAGCTACACTCCTGCTTTCTCTCGCCAGGTCCACAATCCAGC
AACTGGCGAAGTGATAGCAAATGTATCGTGTATGGGAGGAAAGGAAACAA
AAGATGCTATATCTTCGGCTTTTGATGCGTTTAATTCTTGGAGCAAGCTC
ACTGCTGCTGAGAGAAGCAAGGGTTTGCGGAAATGGTATGATCTACTGAT
GGCTCACAAAGAAGAGCTTGGCCAACTAATAACATTGGAGCAGGGGAAAC
CTCTTAAAGAAGCTGTCGGTGAGGTTGACTATGGAGCCAAGTTTATTGAG
TTCTATGCAGAGGAGGCGAAACGTGTATATGGTGAAATAATTCCCGCAAC
TCTGCCTGATCGCCGGTTATTTGTTCTAAAGCAGCCTGTAGGTGTTGCTG
GTGCAATTACACCATGGAACTTTCCCTTGGCTATGATTACCCGAAAGGTT
GGTCCGGCCCTTGCTTGTGGTTGTACAGTGGTTGTAAAACCCTCTGAATT
TACACCTCTCACTGCTTTAGCAGCAGCTGAGCTCGCCTTGCAGGCTGGAA
TCCCACCGGGTGTTGTGAATGTGGTTATGGGGAATGCTCCTGATATT
back to top