CK932659

Overview
NameCK932659
Unique NameCK932659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.005e-13
Identity = 31/90 (34.44%), Postives = 52/90 (57.78%), Query Frame = 2 
Query:  113 LYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382
            ++ +P+H  WF W+ IH  E  +L  FF+G    RT ++Y+E R++++ K+   P+ ++    + +  VGD     +V   LD WGLINF
Sbjct:  144 VHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDYWGLINF 233
[Close]
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.466e-13
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  113 LYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVG-DVSLLHKVFRLLDEWGLINFGA 388
            ++ +P HS WF  + +   ER  + +FF G S + TP+ Y E+R+ +++KY E P + LT +  +  + G D+    +VFR LD WG+IN+ A
Sbjct:  175 VHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCA 267
The following BLAST results are available for this feature:
BLAST of CK932659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SWI3D_ARATH2.005e-1334.44SWI/SNF complex subunit SWI3D OS=Arabidopsis thali... [more]
SWI3C_ARATH4.466e-1336.56SWI/SNF complex subunit SWI3C OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004531_B07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932659 ID=CK932659; Name=CK932659; organism=Citrus sinensis; type=EST; length=874bp
GGGGAAACCTATACAGAGCGAAATTTTTAGGTCGACTCCGACTCAATTCG
TGGTTCAAGTCCGACATATGGAGATGCCACAATATGACCCGAATACTAAA
CCCGAATTCGAACTCTACACCATCCCAAGTCACTCCAGTTGGTTTAGATG
GGACGACATTCACGAAACCGAGCGTACTGCCCTAAAAGAGTTCTTCGACG
GGAGCTCAATTTCAAGAACACCGAAGATATACAAAGAGTACAGAGATTTT
ATGATAAACAAGTACAGGGAAGAGCCTTCGAGGAGGCTGACATTCACCCA
AGTGAGAAAATCACTGGTGGGTGACGTTAGTTTGCTCCACAAGGTCTTTA
GATTGTTGGACGAGTGGGGTTTGATCAATTTTGGTGCAGTATCGCGTGGT
GATGATAGTGATAATAGAGACAGCAGCTTAGGGGATACAGAGCTTAAGAA
TCAAGTTAAGATTAAGGAAGGAGCCCCCAATGGTGTTCGTGTTGTTGCAT
TGCCCAATTCATTGAAACCCATTTCGGTTCCAAATTCTGGAGCAGATGGT
AGTGGCAATGGTAAAGTGGTAGTGGCAGGTGAGACCGGGGTTTAAATTGC
CTCCCTTGACTTCGTATTTGGATGTTTTTGGTGATTTGGTGAAGTTGAAG
GGGTTTAAGTGCGGTAGTTGTGGCGAGCAGTGTAATTCCGGATGCTATGA
GTATAGCAAGGGTAGTTTTGTAATCTGTGAAAAGTGCTTCAAAAATGGAA
ATTATGGGGAGGACAAGTCCAAGGATGATTTCAGGTTTAGTGACCTAGGA
GGAAACAGTCTTACTCATGGAGCTACTTGGACTGAGGCAGAAACTCTACT
TCTTTTGGAATCTGTTATGAGNNN
back to top