CK932666

Overview
NameCK932666
Unique NameCK932666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1050..1841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.245e-56
Identity = 106/116 (91.38%), Postives = 114/116 (98.28%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 352
            AKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE+LTKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETF+EYPPLGRFAVR MRQTVAVGVIK+V+KKDP+GA
Sbjct:  322 AKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTGA 437          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.833e-55
Identity = 104/116 (89.66%), Postives = 111/116 (95.69%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 352
            AK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  322 AKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.833e-55
Identity = 104/116 (89.66%), Postives = 111/116 (95.69%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 352
            AK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  322 AKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.924e-55
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 352
            AK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK V+KKDP+GA
Sbjct:  322 AKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTGA 437          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.573e-46
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 2
Query:    8 KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            K A++FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KFAEI +KIDRRSGKELEK PK +K+GDA  V+M+P KPM VE F++Y PLGRFAVRDMRQTVAVG+IK+V KKD SG
Sbjct:  323 KEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.687e-45
Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            AK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRR+GK LE  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVG+IKSVDK D SG
Sbjct:  332 AKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.758e-45
Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            AK A +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRRSGK+LE  PKF+K+GD+  VKMIP+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  332 AKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.436e-44
Identity = 82/108 (75.93%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   11 GASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 334
            GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  335 GAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.436e-44
Identity = 82/108 (75.93%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   11 GASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 334
            GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  335 GAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.436e-44
Identity = 80/114 (70.18%), Postives = 99/114 (86.84%), Query Frame = 2
Query:    8 KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E+L KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K + +G
Sbjct:  334 KGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEKTG 447          
The following BLAST results are available for this feature:
BLAST of CK932666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
EF1A1_DAUCA1.245e-5691.38Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU6.833e-5589.66Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU6.833e-5589.66Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_WHEAT8.924e-5589.66Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_TRYBB7.573e-4677.19Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_SCHCO1.687e-4573.91Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_ABSGL3.758e-4573.91Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_SORMA2.436e-4475.93Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_NEUCR2.436e-4475.93Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_COCIM2.436e-4470.18Elongation factor 1-alpha OS=Coccidioides immitis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_A07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932666 ID=CK932666; Name=CK932666; organism=Citrus sinensis; type=EST; length=792bp
GGGCGCCAAGGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACC
ACCCTGGCCAGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACT
TCCCACATAGCTGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCG
ATCTGGTAAGGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATG
CTGGGTTTGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTC
TCCGAATATCCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGAC
CGTCGCTGTTGGAGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAG
CCAAGGTAACCAAGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCT
TTGTCTGCAAGTAATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCT
TTTTAGGCATAAATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATA
ATTACAATTCGTCACCATCGACAAGAGACTTTTGTTCACAGAACTGGGTT
CTTGATCGGCGGTGGCGAGATTACTGTATTGAGTCTATTTTTGTTGTCCA
TGTCATGTTCAAACTTGGATATTTTGTAAGCAGCTCAGGAGTTTTAGGTC
TCTGCTGAGCTCCTTAAGATGTTGTTTGTTGATGTTTTATGTTCTATCTA
GTTTGCCATTTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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