CK932666

Overview
NameCK932666
Unique NameCK932666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1050..1841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.000e-43
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            AK + NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KFAE+  K+DRR+GK  E  PKFLK+GDAG V++IPTKP  VE+F++Y PLGRFAVRDMRQTVAVGVIKSV K D SG
Sbjct:  335 AKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDDGSG 449          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.000e-43
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            AK + +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KFAE+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D SG
Sbjct:  334 AKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.337e-42
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 2
Query:   14 ASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 337
            A+NF +QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSV+KK
Sbjct:  337 AANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.746e-42
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 2
Query:   14 ASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 337
            A+ FT+QVII+NHPGQI  GYAPVLDCH +HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  337 AAGFTAQVIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.280e-42
Identity = 80/115 (69.57%), Postives = 97/115 (84.35%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            AK  +NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF EI +K+DRRSGK LE+EPKF+K+G+A  V+M+P KPM VE F++YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  322 AKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.280e-42
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 2
Query:   14 ASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 337
            A+ FT+QVII+NHPGQI  GYAPV DCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  337 AAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.978e-42
Identity = 82/114 (71.93%), Postives = 97/114 (85.09%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 346
            AK A  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE+F++Y PLGRFAVRDMRQTVAVGVIKSV+K D S
Sbjct:  334 AKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGS 447          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.978e-42
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 346
            A+G+ +F +QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K DRR+GK  E EPKF+K+GDA  + ++P+KP+ VE FS++PPLGRFAVRDMRQTVAVGVIKSV+ KDP+
Sbjct:  334 ARGSQDFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.978e-42
Identity = 81/114 (71.05%), Postives = 97/114 (85.09%), Query Frame = 2
Query:    5 AKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 346
            AK + +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KFAE+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D S
Sbjct:  334 AKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGS 447          
BLAST of CK932666 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.889e-42
Identity = 79/114 (69.30%), Postives = 98/114 (85.96%), Query Frame = 2
Query:    8 KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 349
            KG ++F +QVII+NHPG+I  GYAPVLDCHT+HIA KF+E++ K+DRRSGK+LE  PK +K+GDA  VKM+ +KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+KK+  G
Sbjct:  327 KGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
The following BLAST results are available for this feature:
BLAST of CK932666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
EF1A3_OSCTI6.000e-4372.17Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI6.000e-4371.30Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_DANRE1.337e-4276.85Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A3_HUMAN1.746e-4276.85Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A_STYLE2.280e-4269.57Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A1_HORSE2.280e-4276.85Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A_CAEEL2.978e-4271.93Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_ARTSA2.978e-4268.42Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A4_OSCTI2.978e-4271.05Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_PORYE3.889e-4269.30Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_A07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932666 ID=CK932666; Name=CK932666; organism=Citrus sinensis; type=EST; length=792bp
GGGCGCCAAGGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACC
ACCCTGGCCAGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACT
TCCCACATAGCTGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCG
ATCTGGTAAGGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATG
CTGGGTTTGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTC
TCCGAATATCCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGAC
CGTCGCTGTTGGAGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAG
CCAAGGTAACCAAGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCT
TTGTCTGCAAGTAATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCT
TTTTAGGCATAAATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATA
ATTACAATTCGTCACCATCGACAAGAGACTTTTGTTCACAGAACTGGGTT
CTTGATCGGCGGTGGCGAGATTACTGTATTGAGTCTATTTTTGTTGTCCA
TGTCATGTTCAAACTTGGATATTTTGTAAGCAGCTCAGGAGTTTTAGGTC
TCTGCTGAGCTCCTTAAGATGTTGTTTGTTGATGTTTTATGTTCTATCTA
GTTTGCCATTTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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