CK932688

Overview
NameCK932688
Unique NameCK932688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.425e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.630e-24
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 3 
Query:    3 AIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 170
            +I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:   22 SIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY 77
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.630e-24
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.966e-24
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.966e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   23 IDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.966e-24
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.700e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            IDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.700e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 3 
Query:    3 AIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            +I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 SIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.700e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            IDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.700e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            IDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CK932688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
UBIQ_ARATH3.425e-24100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_ENCCU7.630e-2492.86Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_COPCO7.630e-2498.15Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_TRYCR9.966e-2498.15Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_EUPEU9.966e-2498.15Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_CHLRE9.966e-2498.15Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST1.700e-2396.30Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_STRPU1.700e-2394.55Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_SCHPO1.700e-2396.30Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA1.700e-2396.30Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932688 ID=CK932688; Name=CK932688; organism=Citrus sinensis; type=EST; length=423bp
GGGCAATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCC
CCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAG
GACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGC
TCCGACTCCGTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTC
TTATTTGCTTCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAAT
AGCTTAAATAACTATTTGAAGTTTATTTTGGTTTGTGGTAGTTGAACTCT
GTTTCTAAGATATTGATATGGTCCCACTAACGTCCCATTATAATATCTAA
GAATCTTTTTCTTGAATAAATACATGTTTAATGTGCAGTACCAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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