CK932688

Overview
NameCK932688
Unique NameCK932688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 3 
Query:    3 AIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            +IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 SIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.220e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CK932688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
UBIQ_PIG2.220e-2396.30Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PHYIN2.220e-2394.55Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_PANTR2.220e-2396.30Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA2.220e-2396.30Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE2.220e-2396.30Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE2.220e-2396.30Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA2.220e-2396.30Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU2.220e-2396.30Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN2.220e-2396.30Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE2.220e-2396.30Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932688 ID=CK932688; Name=CK932688; organism=Citrus sinensis; type=EST; length=423bp
GGGCAATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCC
CCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAG
GACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGC
TCCGACTCCGTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTC
TTATTTGCTTCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAAT
AGCTTAAATAACTATTTGAAGTTTATTTTGGTTTGTGGTAGTTGAACTCT
GTTTCTAAGATATTGATATGGTCCCACTAACGTCCCATTATAATATCTAA
GAATCTTTTTCTTGAATAAATACATGTTTAATGTGCAGTACCAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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