CK932688

Overview
NameCK932688
Unique NameCK932688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            ID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   23 IDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            ID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   23 IDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   23 VERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   23 VERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   23 VERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   23 VERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   23 VERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            +D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   23 VDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:   23 IQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of CK932688 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 3
Query:    6 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 167
            +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:   23 VSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CK932688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RUB2_ORYSJ7.158e-1464.81NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB2_ARATH6.060e-1362.96NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT1.763e-1257.41NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT1.763e-1257.41NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE1.763e-1257.41NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN1.763e-1257.41NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN1.763e-1257.41NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ3.008e-1257.41NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
NEDD8_DICDI1.493e-1155.56NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO4.343e-1151.85Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932688 ID=CK932688; Name=CK932688; organism=Citrus sinensis; type=EST; length=423bp
GGGCAATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCC
CCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAG
GACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGC
TCCGACTCCGTGGAGGTTTCTGAGTTTGGTCATCTGGGTGTGTGTGTGTC
TTATTTGCTTCGGTTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAAT
AGCTTAAATAACTATTTGAAGTTTATTTTGGTTTGTGGTAGTTGAACTCT
GTTTCTAAGATATTGATATGGTCCCACTAACGTCCCATTATAATATCTAA
GAATCTTTTTCTTGAATAAATACATGTTTAATGTGCAGTACCAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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