CK932690

Overview
NameCK932690
Unique NameCK932690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_DROME (DNA polymerase alpha catalytic subunit OS=Drosophila melanogaster GN=DNApol-alpha180 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.118e-28
Identity = 75/205 (36.59%), Postives = 115/205 (56.10%), Query Frame = 1
Query:   22 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDK 627
            SERALL+  + +  K+D+D++V  +     L+V+  +    ++P   WS++GRL+ S+          FG      ++    GR++CD    + + +R  SY L  L K  L     +R EV   D+L+M++  ES+ +LI     D    + LM  L+++PL  Q+TNI GN   +TLQG R++R E+LLLHAFH K YIVPDK
Sbjct:  639 SERALLSWFLAQYQKIDADLIVTFDSMDCQLNVITDQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRSAEECIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK 828          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOLA_TRYBB (DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 80/212 (37.74%), Postives = 122/212 (57.55%), Query Frame = 1
Query:   22 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIM--SCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQL-------NKDRKEVGPHDVLK-MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDK 627
            +ERALL      L  LD D++VGHNI G+ ++ LL+R Q   +    WS IGRL     P+++      G+  +  I   +C+ GRL+ DT+L +R+  +  +Y L  L+ TQ+       N+   E G   ++K    + E+L  ++      A LS  +   L V+PLT++LT ++GNLW +TL GAR++R+EYLLLHAFH  K++ PDK
Sbjct:  506 NERALLTWFAETLAALDPDIIVGHNIIGYTVETLLNRYQELNIVR--WSTIGRLDVRRFPRIQ------GNNFNLAIEKEACV-GRLVVDTYLLAREYYKSTNYKLLSLS-TQMEIKGITDNRGHFEPGSTVLVKDSMMSSEALCPILLQLLNCAVLSFNVASFLDVIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDK 707          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOA_SCHPO (DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe GN=pol1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.854e-26
Identity = 80/232 (34.48%), Postives = 122/232 (52.59%), Query Frame = 1
Query:   13 CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMF-QTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKMAKQRINHGVEDRNVEE 702
            CE SE +LLN  + ++   D DV  GH+       VLL R +  ++ +  WS IGRL+RSE P     R+   S         IAGRL+CD      R +++  S+SL+++   +L+  R+++     L+ +  T   L++ + + E D +    + F + +L L++ LTNI+GN W +TL G RA+R EY+LLH F    YIVPDK   ++    A      G ED   EE
Sbjct:  598 CERSEVSLLNNFLNKVRTYDPDVYFGHDFE-MCYSVLLSRLKERKIHN--WSSIGRLRRSEWP-----RSFNRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVLKELDIKRQDINQEKALQSWTDTAHGLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERNEYILLHEFKKNGYIVPDKQQSIRRHAEA-----FGAEDGLQEE 816          
BLAST of CK932690 vs. ExPASy Swiss-Prot
Match: DPOA_YEAST (DNA polymerase alpha catalytic subunit A OS=Saccharomyces cerevisiae GN=POL1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 75/233 (32.19%), Postives = 115/233 (49.36%), Query Frame = 1
Query:   19 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPG----IMSCIAGRLLCDTFLCSRDLLREV--SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTYVKETKMAKQRINHGVEDRNV 696
            ++E+A+L+     L   D DV++GH +    LDVL HR     +P+  +S IGR  R   P+       FG G S      I    +GRL+CD        L     S+ L+++ +    K+ K +        +Q  + S+   ++   T+  +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F    +IVPDK      ++  KQR N    D  V
Sbjct:  614 NNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYLDVLAHRMHDLNIPT--FSSIGRRLRRTWPEK------FGRGNSNMNHFFISDICSGRLICDIANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDK--EGNRSRAQKQRQNEENADAPV 836          
The following BLAST results are available for this feature:
BLAST of CK932690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DPOLA_DROME4.118e-2836.59DNA polymerase alpha catalytic subunit OS=Drosophi... [more]
DPOLA_TRYBB1.565e-2737.74DNA polymerase alpha catalytic subunit OS=Trypanos... [more]
DPOA_SCHPO3.854e-2634.48DNA polymerase alpha catalytic subunit OS=Schizosa... [more]
DPOA_YEAST8.317e-2132.19DNA polymerase alpha catalytic subunit A OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932690 ID=CK932690; Name=CK932690; organism=Citrus sinensis; type=EST; length=784bp
GGGGTTTTATGCTGTGAAAGCAGTGAGAGAGCCTTGTTAAACCGTTTGAT
GATTGAATTATACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATAT
CTGGGTTTGACCTTGATGTTCTCCTTCACAGAGCCCAGGTTTGTAGAGTG
CCTAGCAGCATGTGGTCAAAGATTGGCCGTCTCAAGCGTTCTGAAATGCC
AAAGCTTAGAAAAGGAAGAACCATTTTTGGATCTGGAGCAAGTCCAGGGA
TCATGTCTTGCATTGCTGGTCGGCTCTTATGTGACACATTTTTGTGTTCA
CGTGACCTATTAAGAGAGGTCAGTTATTCTTTGACACAACTTGCAAAAAC
TCAGTTGAACAAAGACCGGAAGGAGGTTGGCCCACATGATGTTCTGAAAA
TGTTCCAAACGTTGGAATCTCTTATGGAACTTATTGAATATGGTGAAACA
GATGCATGGTTATCTATGGAGCTCATGTTCCATTTGAGTGTTCTTCCCCT
CACTCGACAACTGACAAACATCAGTGGTAATCTTTGGGGGAAAACCCTTC
AAGGTGCTAGGGCACAGAGAGTGGAGTATCTTCTATTACATGCATTCCAT
GCAAAGAAATATATTGTCCCAGACAAGTTTACATATGTTAAGGAAACAAA
AATGGCAAAGCAGAGAATCAATCATGGTGTTGAGGATAGAAATGTTGAAG
AGTTAACTAATGAAGATGCAAACTTTGACAATGATACTTCACACAATGAC
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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